Scomber japonicus (chub mackerel): 128362950
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Entry
128362950 CDS
T09718
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128362950 (si:ch211-114c17.1)
Spliceosome [BR:
sjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
128362950 (si:ch211-114c17.1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_2
TPR_12
TPR_11
TPR_MalT
HrpB1_HrpK
ARM_TT21
TPR_21
Ras_bdg_2
HAT
ARM_TT21_4th
MutS_II
Motif
Other DBs
NCBI-GeneID:
128362950
NCBI-ProteinID:
XP_053179798
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Position
8:complement(18978316..18986255)
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AA seq
677 aa
AA seq
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MTRRGNHLQILSVCGRLHMTILKTSPAGLICYNTASRRCAIVILRGQTGKNHQGHITASR
RALEAFLTRYPLCYGYWKKFADLERRAGYNSKAEEVCVQGLQAIPLSVDLWIHYINLLLG
TLDMNLPESPTRIRSVFEEAVAAAGLDFHSDRLWDLYVEWEKEQGNMRNAAAVLNRALKV
PTQVYNTHYEKFKTHLSSHEPKEVLSSEEYEELRTLCRQSQKAERAEQAQEEEEERPPGE
EEPTTPEGTDSEELMQKIREQVLVHRDKVYQDNEGEVRKRWHFEDAIKRPYFHVKPLDRV
QLRAWHSYLDWEIAQLNKDTKDPNQDPSQAATEESEVTAQPQEGSGEAAVAVDDHRVRIL
FERCLIACALYEEFWIRYVHYLEPHSVDEARAVFKRACEVHLMFKPNIHMQWATFEERHG
DLTEARRVLEALEKTLPGLAVVRIRRAALERRAGQLDQSEALLQEAVIESKEKPTLHAFY
SIKLARLLLKLGRNPSRARRVLQEALEISPDNDKLHLNLLELEVSGEPWASAEAVQECVT
RALAAPLAPHTKILFSQRGLQYAEDYSNSIQSVLSVYEEHQKLLNELGGTKRGAENGDED
PEKLSKSDDGSAVAVSAQVPPTMAHVPITTPPPPVMGTDMSAQAGYGGYSSWYQQPQYGG
YNYQNTWNYNQGYYPPS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggagggggaaccacctgcagattttgagcgtctgtggaaggctgcacatgaca
atcctcaagacttcaccagctggactgatctgctacaatactgcgagcaggaggtgtgcg
atcgttattttgagggggcaaacgggaaagaatcatcagggtcacatcacagcgtcacgc
agagcactggaggccttcctaacccgctacccgctctgctacggctactggaagaaattt
gctgatttggagcggcgcgctggatacaacagcaaagcagaggaggtgtgtgttcagggc
ctccaggcgatccctctaagtgtagatctgtggatccactacatcaatctgctgctggga
acgctggacatgaacctgcctgagtcgcccacacggattcgcagtgtgtttgaggaagca
gtggcagcagcaggtctggacttccactcagaccggctctgggatctgtacgttgagtgg
gagaaggagcaggggaacatgaggaatgctgcagctgttctgaacagagccctcaaagtc
cccacccaggtgtataacacccactacgaaaagttcaagacccacctgagtagtcatgaa
cccaaagaggtgctttcctcggaggagtatgaggagctgaggacgttgtgccgtcagagt
cagaaggcggagcgtgctgaacaggcccaggaggaggaggaggagaggccgcctggggag
gaagaacccaccacacccgagggaacagattcggaggaactgatgcagaagattagggaa
caggtgttggttcacagggacaaggtttaccaggacaacgagggagaagtccgcaagaga
tggcactttgaagatgctatcaaacgtccgtacttccacgtcaagccgctcgatcgtgtc
cagctgcgtgcctggcactcctacctggactgggagatcgctcagctgaacaaggacacc
aaagaccccaaccaagatccgagccaggcagccacagaggagtcagaggttacagcccaa
cctcaggaaggatcaggggaggctgccgttgcagttgatgaccacagagttcgcatcctc
tttgaacgttgtctgatcgcctgcgctctgtatgaggagttctggatcaggtacgttcat
tacctggagccgcacagtgtggacgaggctcgggctgtgttcaaacgggcctgtgaggtc
cacctgatgttcaaacccaacatccacatgcagtgggctaccttcgaggagaggcacggt
gacttaacagaggcccgacgagtgctggaggccttggagaaaaccctgcctggattggca
gtggttcgtatccgcagggccgctttggaaagacgggcgggccagctggaccaatcggag
gccttgctgcaggaggcggtgatagaatccaaagagaagccaacattgcacgctttctac
tccatcaagcttgctcgcctactgctgaagctgggcaggaaccccagcagagcacgcaga
gttttacaggaggcgctggaaatcagtccggataatgataaactgcacctgaacctgttg
gagctagaggtgtcaggggagccctgggcctcagctgaggcggtgcaggagtgtgtgact
cgagctctggcagctccccttgccccacacaccaagatcctcttctcccagaggggcctg
cagtacgccgaggactacagcaactccatccagagtgtgttgtctgtgtatgaagagcac
cagaaacttctgaacgagctgggcggaacaaagagaggagcagaaaatggggatgaggac
ccagagaagctgagcaaaagtgatgacggctctgctgttgccgtgtccgcacaagtccct
cctaccatggcacacgtccccatcaccacgccccctcctccagtgatgggcactgacatg
agtgctcaggctggctacggtggatacagcagttggtaccagcaaccacaatatggcggt
tacaactatcagaacacctggaactacaaccaaggctactatccacccagctaa
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