Scomber japonicus (chub mackerel): 128362982
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Entry
128362982 CDS
T09718
Symbol
pitx2
Name
(RefSeq) pituitary homeobox 2 isoform X1
KO
K04686
paired-like homeodomain transcription factor 2
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
128362982 (pitx2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128362982 (pitx2)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
128362982 (pitx2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
AATF-Che1
XRCC4_C
Motif
Other DBs
NCBI-GeneID:
128362982
NCBI-ProteinID:
XP_053179836
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Position
8:25372851..25379244
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AA seq
315 aa
AA seq
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MNSMRDPLNIDHHHHHLTGNKLASTHHTALAMASSLQPLQRSVDSKHRLEVHTVSDTSSP
ESVEKEKIQNKNDDSSDDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV
WTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPSYTYNNWA
AKGLTSASLSTKSFPFFNSMNVNPLSSQTMFSPPNSISSMTSSMVPSAVTGVPGSSLNSL
NNLNNLSNPSLNTGVPTTACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNP
ATNLSACQYAVDRPV
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgaactctatgagggatccattaaacatagaccaccaccaccaccacctaacagggaat
aaacttgcctccacacaccacacggctctggcgatggcctctagtttacagccactgcag
cggtctgtggactcgaaacatcggttagaggtgcatacggtgtcggacacgtccagtccg
gagtcagtcgagaaagagaagatccaaaataaaaacgacgactcctcagatgacccctcg
aaaaagaagcggcagcgacggcagaggactcacttcaccagccagcagctgcaggaattg
gaggccactttccagcggaatcgctatccggacatgagcacaagggaggagatagccgtg
tggaccaacctcacagaggcccgggtcagggtttggttcaagaaccggcgagccaagtgg
aggaaacgggaaagaaaccaacaagccgagctttgcaaaaacggcttcggcccgcagttc
aatggactcatgcagccctacgacgacatgtaccccagctacacatacaacaattgggcc
gccaagggcctcacgtcggcctccttatccactaaaagcttccccttcttcaactccatg
aatgtcaaccccttatcctcgcagaccatgttctcaccgcccaactccatatcctccatg
acttccagcatggtgccatcggcggtcaccggggtgccgggctccagtctcaacagcctc
aataacttgaacaacctcagtaacccgtctctcaacactggggtgcccacgacggcctgc
ccttacgcgcctccgacccctccttatgtgtacagggacacttgcaactccagcctggcc
agcctgagactgaaagccaagcagcactcgagttttggatatgccagtgtgcagaatccg
gccactaatctgagcgcttgccaatacgccgtggacagacccgtctaa
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