Scomber japonicus (chub mackerel): 128362988
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Entry
128362988 CDS
T09718
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128362988 (ssrp1a)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128362988 (ssrp1a)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
128362988 (ssrp1a)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
128362988 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
SSRP1_C
HMG_WDHD1
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
128362988
NCBI-ProteinID:
XP_053179842
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All DBs
Position
8:complement(18866623..18879201)
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AA seq
705 aa
AA seq
DB search
MGDTLEFNEIYQEVKGSWNDGRLRFSKQNVVYKSSKTGKVDSIQASELNLAQWRRVCLGH
GIKLSTSTGHVYKYDGFRDTDFEKISDFFKTNYKLEVTEKDMCVKGWNWGTAKFSGPLLA
FDINDNTAFEIPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPSQADERQDPVE
AFAQNVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDLSLTLNMSEEDVERRFE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEGMKGKIDEYSDSDDDQHDAYLERMKAEGKIREEGNDSDDSDSGSDES
FNPGEEDDDIAEEYDSKASASNSSDEGDESEDESAKKKKVKKVKVVKEKKERKPRKEKKQ
KDTGGPKRPMSAYMLWLNSSRERIKSENPGISITEISKKAGEMWRQIGKDEKEEWEAKAG
EAKRQYDKAKKEYNESGGGSSSVSKKESKKSGGKKEEKKRKSAGGEKERDRGVGNESFKS
KEFIETSESSSDSDHKSKSKRKKQESDEEEEEAASTPASSEEESD
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgggagacactctggagttcaacgagatttaccaggaggtgaaagggtcctggaatgac
gggcggctgcgtttcagcaagcagaatgttgtttacaagagcagcaagacaggaaaggtg
gacagcatccaagccagtgaactcaacctggcccagtggagacgagtgtgtttaggtcac
ggcatcaaactgtccaccagcacaggacacgtctacaaatacgacggcttcagggacacc
gactttgagaagatctctgattttttcaagacaaactacaagctggaggtgacagagaaa
gacatgtgtgtgaagggctggaactgggggacagcaaagttttcagggcctctgttagca
tttgatataaatgacaatacagcattcgagatcccactgtccaacgtgtcacagtgtgcc
acagggaagaatgaagtcactctggagtttcaccagaatgacgacactgaggtctcactc
atggaggtccgcttctacgtcccacccagccaggctgatgagcggcaagaccctgtagag
gcgtttgcccagaacgtgctgtctaaggctgatgtgatccaggcaactggagatgctgtg
tgtatcttcaaagagctgcagtgtcttacacccagaggaagatacgatatccgtatctac
ccgaccttccttcacctccacggaaagacgtttgactacaagattccttacacgaccgtc
ctccgtctattcctgctgccacacaaggaccagaggcagatgttctttgtgatcagtctg
gatcctcctatcaagcagggacagacacgttatcacttccttatcctgctcttttccaag
gaagaggacctcagcctcacacttaacatgagcgaggaggacgtcgagcgccgttttgag
ggtaaactcagtaagaacatgtcagggtctctgtatgagatggtgagcagggtgatgaag
gctctggtcaaccgaaagatcacagtgcccggaaacttccagggccactcgggggctcag
tgcatcacctgctcctacaaagcatcctccggcctcctctacccgctggagaggggtttc
atctacgtccacaagccccctgtgcacctgcgtttcgaggaaatctcttgtgtcaacttt
gccagaggcaccaccacgacacgttccttcgactttgagattgagaccaagcagggaaac
cagtacaccttcagcagcattgagagagaagagtacggcaaactgtttgactttgttaat
gccaagaagctcaacatcaagaacagaggcttcaaagagggcatgaagggtaagattgat
gagtacagcgactcagacgacgaccagcacgatgcctacctggagaggatgaaggctgag
ggcaagatcagagaggagggcaacgacagcgacgactcggatagtggaagcgatgagtct
ttcaaccccggagaagaagatgacgacattgcagaagagtacgacagtaaggcttcagca
agcaacagcagtgacgaaggagacgaaagcgaagatgagagtgcgaagaagaagaaggtc
aaaaaagtcaaagtggtgaaagagaagaaagaaaggaaaccacgcaaagagaagaagcag
aaagataccggcggccccaagaggccaatgagtgcctacatgctgtggctcaactccagt
cgcgagcgaatcaagtcggagaaccctggtatctccatcacagagatctctaagaaggcc
ggagaaatgtggagacaaatcggcaaagatgagaaggaggagtgggaagcaaaggcagga
gaggcgaagagacagtatgacaaagcaaagaaagagtacaatgagagcggtggaggatca
tcttctgtttccaagaaggagagcaagaagtccgggggtaaaaaagaagagaagaagagg
aagtctgctggaggagagaaggagcgggatcggggagtaggcaacgaaagcttcaaaagc
aaagagttcattgagaccagcgagagttcatcagactctgaccacaagagcaagtccaag
aggaagaagcaggaatcagatgaagaggaggaagaagctgcgtccacacccgccagctca
gaggaagagtctgactaa
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