KEGG   Scomber japonicus (chub mackerel): 128363009
Entry
128363009         CDS       T09718                                 
Symbol
cul4a
Name
(RefSeq) cullin-4A
  KO
K10609  cullin 4
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03420  Nucleotide excision repair
sjo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    128363009 (cul4a)
  09124 Replication and repair
   03420 Nucleotide excision repair
    128363009 (cul4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sjo04121]
    128363009 (cul4a)
   03400 DNA repair and recombination proteins [BR:sjo03400]
    128363009 (cul4a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128363009 (cul4a)
Ubiquitin system [BR:sjo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     128363009 (cul4a)
DNA repair and recombination proteins [BR:sjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      128363009 (cul4a)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      128363009 (cul4a)
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   128363009 (cul4a)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 128363009
NCBI-ProteinID: XP_053179871
LinkDB
Position
1:complement(26438720..26448307)
AA seq 758 aa
MAEDTRQDKRASFSAITEHNTNGMARTSSAVASGKSGASKKLVIKNFKDRPKLAENYTED
TWLKLRDAVGAIQNSTSIKYNLEELYQAVENLCSYKVSPTLYKQLRQVCEDHVQAQIHQF
REESLDNLSFLKRMNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRTH
IVSNSAVQKRTVDGILEQIELERNGETIDRSLLRSLLGMLSDLQVYKDSFEERFLIETNR
LYAAEGQRLMQERDVPEYLHHVARRLEEENDRILSYLDQSTQKPLISCVEKQLLGEHMTA
ILQKGLSILLDENRVTELALLYQLFSKVKGGLPTLLQFWRDYIKSFGGEIVCTPEKDKDM
VQELLDFKDKMDNVAQTCFTRNEAFINAMKEAFETFINKRPNKPAELIAKYVDSKLRAGN
KEATEEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKH
ECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQSEPSNIELTVNILTMGYWPSYTPMEV
HLPSEMVKLQEVFKLFYLGKHSGRKLQWQPTLGHAVLKAEFKEGKKELQVSLFQTLVLLM
FTEGEEFSMEEIRTATGIEEGELRRTLQSLACGKARVLNKNPRGKDVEDGDRFNFNNDFK
HKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLSHNLLVSELYN
QLKFPVKPGDLKKRIESLIDRDYMERDKETPNQYHYVA
NT seq 2277 nt   +upstreamnt  +downstreamnt
atggcagaggacacccgacaggacaagagagccagcttctctgccataaccgagcacaac
accaacgggatggctaggacctcatccgccgtggcctcaggaaaaagtggagcttcaaag
aaattagtcatcaaaaatttcaaagaccggccaaaactagcggagaactacaccgaggac
acgtggctgaaactacgagatgcagtgggtgccatccagaacagcacgtcaatcaagtac
aatctggaagagctctatcaggcggtggagaacctgtgttcatataaagtctcccccacg
ctgtacaagcagctgcgccaggtctgtgaggatcacgtgcaggcccagatccaccagttt
agagaagagtctttggacaacctttccttcctgaagcggatgaatcgctgctggcaggat
cactgcaggcaaactataatgatccgaagtatctttctcttcctggatcgtacatatgtg
cttcagaactctcttcttccctccatctgggacactgggttggagctgttccgcacccac
attgtgagcaacagtgcagttcagaagcgcacagtagatggcattttggagcagattgag
cttgagcgcaatggagagacaatagaccgcagtctgctcaggagtctgctgggaatgctg
tcagacctgcaggtttataaagattcctttgaggagagatttttgattgagaccaatcgc
ttgtatgcagcagagggacagcggctgatgcaggagagagatgtgcctgagtacctgcac
catgtggctcgtcggctggaagaggagaacgatcgtatcctgagctacctcgaccagagc
actcagaaacctcttattagctgtgttgagaaacagcttctaggagaacatatgacagca
atactacaaaagggtctgagcatcctgctggatgagaaccgtgttactgagctggccctc
ctttaccagctcttcagtaaagtgaagggaggacttcccacactgctgcagttctggagg
gattacatcaagtcctttggtggagagattgtatgcacaccagaaaaagacaaggatatg
gtgcaggagcttctggacttcaaggacaagatggacaacgtggcgcagacctgcttcaca
cggaacgaggcattcatcaacgccatgaaagaggcctttgagacgttcatcaacaagagg
cccaacaaacctgctgaacttatcgctaaatatgtggattctaagttgcgagccgggaac
aaggaggccacagaagaggagctggagagaattttagataagataatgataatcttccgt
ttcatacatggaaaagatgtgtttgaagccttctacaagaaggacttggctaagcgcctg
ctggtcggcaagagtgcttctgtcgatgctgagaagtcgatgctctccaagctcaaacat
gagtgcggagcagcatttaccagtaagttggaggggatgttcaaggacatggagctgtcc
aaagacatcatgatccagttcaaacagtacatgcagaaccagagtgagcccagcaacata
gaacttactgtcaacatcctcacaatgggctactggccttcatacacacctatggaggtc
cacttgccctcggagatggtgaaactccaggaggtgttcaagctgttctacctggggaag
catagcgggaggaagctgcagtggcagcccacgctgggccacgctgtgctgaaggcagag
ttcaaagagggtaagaaggagctgcaggtctctctgttccagactctggtgctgctgatg
tttactgagggggaggagttcagcatggaggagattcgcaccgccacaggcatagaggag
ggggagctcaggcgtacgctgcagtccctggcctgcgggaaagcacgcgtcctcaacaag
aatcctcgagggaaagacgtggaggatggagaccgcttcaatttcaacaatgatttcaaa
cacaaactgttccgcatcaagatcaaccagatccagatgaaggaaacggtcgaggagcag
gtaagcaccacagagcgcgtgtttcaggacaggcagtatcagatcgatgcagctgtggtg
cgcatcatgaagatgaggaagaccctcagtcacaacttgctcgtatcggagctctacaac
cagctgaagttccctgtcaagccgggcgatctgaagaagaggatcgagtcactcatagac
agagactacatggagcgggacaaggagactccgaaccagtaccactatgttgcctga

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