KEGG   Scomber japonicus (chub mackerel): 128363071
Entry
128363071         CDS       T09718                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03420  Nucleotide excision repair
sjo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    128363071 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    128363071 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sjo04121]
    128363071 (cul4b)
   03400 DNA repair and recombination proteins [BR:sjo03400]
    128363071 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128363071 (cul4b)
Ubiquitin system [BR:sjo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     128363071 (cul4b)
DNA repair and recombination proteins [BR:sjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      128363071 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      128363071 (cul4b)
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   128363071 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 128363071
NCBI-ProteinID: XP_053179940
LinkDB
Position
8:21234484..21247423
AA seq 869 aa
MFPTGLSSPNPPPPPTQEARPAATDVKHDSGNITSPKKRKINGSEREDTTDTISSSPPKT
LNSSSSSSSSSSCSPTPLHIQKKLRFEDSVDFIGLDVKMAEEAAAAAASCSNNKSKAVFL
AGGGGVGHHANGLTKTAGSATFSNSKPGAAKKLVIKNFKEKPKLPENYTQETWQKLKEAV
EAIQNSTSIKYNLEELYQAVENLCSHKISAKLYKQLRAVCEDHIKAQIDQFREDALDSVL
FLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQS
KTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRL
MQEREVPEYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLTHL
LDENRIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKD
KVDHIIDVCFMKNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELE
KMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSK
LEGMFKDMELSKDIMVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPPEMVRL
QEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTL
EEIKLATGIEDSELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFRIKIN
QIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFPVKPA
DLKKRIESLIDRDYMERDKENPNQYNYVA
NT seq 2610 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttatcttcccctaatcccccaccaccgccaacccaggaggctaga
ccagcggctactgatgtcaaacacgacagcggtaacatcacatctccgaagaagaggaaa
ataaacggctccgagagggaagacaccaccgacaccatctcctcttcgcctcccaagacc
ctgaattcctcctcttcctcctcctcttcttcctcctgctctcccactccgctgcacatt
cagaagaagttgaggtttgaggattcagtggatttcattggactggatgtgaaaatggct
gaggaggctgctgccgccgccgcttcgtgctccaataacaaaagcaaagccgtgttcctg
gccggcggcggcggcgtggggcaccatgcaaacggactgacgaaaaccgcaggctccgcc
accttctccaacagtaaacccggtgctgccaagaaactagtcatcaaaaacttcaaagaa
aaacccaaattgccagagaactacacacaggagacctggcagaagctgaaggaggcagta
gaggccatacagaacagcacttcaatcaagtacaatctagaggagctctaccaggctgtt
gagaacctgtgctcccataagatatctgccaagctttacaagcagctgagggctgtgtgt
gaagaccacatcaaggcacagattgatcaattcagagaggatgccctggacagtgtgctt
ttcctgaagaaaattgacaagtgctggcaggatcactgcagacaaatgatcatgattagg
agtatatttttgtttttggaccgcacctatgttttacaaaattcaatgctgccatcaatc
tgggacatgggtctggagctgttcaggttctacataatcagtgacctgaaggtccagagt
aaaaccattgatgggattctgctgctcattgagagggagcgaaacggagaggcgatagac
cgcagtctgctgaggagcctgctgagcatgctctctgacctgcagatttatcaagactct
tttgaacaacgctttttggaggaaactaatcgcctgtacgctgcagagggacagaggctg
atgcaggagagagaggtaccagaatatctccatcacgtcaacaaacgcttggaggaggag
gcagacagagtcatcacatatctagaccagagcacacaaaaaccactcatagctactgtg
gagaagcagctgctgggtgaacatctcactgctactctgcaaaaagggctgactcacctg
ctggatgaaaacagaattcaggatctctctcttctctatcaactcttcagtcgagtgcga
ggcggtgtacaggtcctcctgcagcactggatagagtacataaaggcttttggaagcaca
attgtaatcaatccagaaaaagacaaaactatggtgcaagagctgctggacttcaaagac
aaggtggatcacatcatcgacgtgtgcttcatgaagaacgagaagtttgtcaacgccatg
aaggaggctttcgaaacattcatcaacaaacggccaaataaacctgcagagctcatagca
aaacatgtggattcaaaactgagagcaggaaacaaagaggcaacggatgaagagctggaa
aagatgctggataaaatcatgattatctttagattcatctatggtaaagatgtttttgag
gccttctacaagaaagatctggccaagaggttactagttggaaaaagcgcctctgtggat
gctgaaaaatcgatgctgtcaaaactgaaacatgaatgcggagcggcgttcaccagcaaa
ctggagggaatgttcaaagatatggagctttcaaaagacatcatggtgcagttcaaacag
tatatgcagtgccaaaatattcccggcaacattgagctgacggtgaacatcctcactatg
ggttactggccaacttatgtcccgatggaagtgcacctgccccctgagatggtgcgactg
caggagatcttcaagaccttctacctgggcaaacacagtggcaggaaactccagtggcaa
tcaacactaggacattgtgtcttaaaagcagaatttaaagagggcaagaaggagctgcag
gtgtcacttttccaaacacttgtgctactgatgtttaatgaaggagaggagttcactctg
gaggagatcaaactggcaacaggaatagaggatagtgaactgcgtcggactctgcagtcc
ctcgcctgtggaaaagcacgtgttctcaccaaaatccccaaaagcaaagacgtggaggac
ggggacaagttttcttgcaacgatgacttcaaacacaagctcttcaggatcaaaatcaac
cagatccagatgaaagaaacggtggaagaacaagccagcaccacagaaagggtctttcag
gatcggcagtatcagattgatgctgcgatagtgcggatcatgaagatgaggaagactctg
agccataatcttttgatgtccgaggtgtacaaccagctcaagttccctgtcaagcctgct
gacttgaagaagaggatagagtctcttattgacagggactatatggagcgtgacaaggag
aaccccaaccagtacaactatgtggcttaa

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