Scomber japonicus (chub mackerel): 128363120
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Entry
128363120 CDS
T09718
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128363120 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128363120 (polr1a)
Enzymes [BR:
sjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128363120 (polr1a)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
128363120 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
HMG_box
Motif
Other DBs
NCBI-GeneID:
128363120
NCBI-ProteinID:
XP_053180006
LinkDB
All DBs
Position
8:complement(7656228..7679289)
Genome browser
AA seq
1694 aa
AA seq
DB search
MLFGKDVPWRRMEGMSFGLYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNNCPGHFGHLELPLPVYNPLFFDKLYLLIRGSCLLCHMLTCPRAAIHLL
INQIKLVDHGAMREVYQAEQVLNQTLEANAKATGDEIEQALKEFTDSIIGANAEASENSK
PIKHLVEMKSSLINDFWKIHMKTRKCPYCRSGRFTVRREHNSKLIVTMPSGAQTDGNSDE
DLMAGKRVYLTASTAREHSNKLWEKEGFFLKHLFSGLEAGPGLGVGESVFYPDLFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVIRKLLALIAGEKTTEEEEAPEQTDQ
SFLSGIPGVSLTDKLYNVWVRLQTRVNIVFDSDMDKMMSEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRRTILSPTNLAQREAVAKQLLTPCPGVHKMAMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTSDQYHELVYRGLTDKPGRVKLLPP
AIFKPQRLWTGKQLVSTLLLNVIPDKAVPLNLVGKSKIPSKAWIQEPPRLAPGYKPDSMC
DSQVVIRQGELLVGVLDKAHYGSSVYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANRQRKKIIQESLKIGTKALQAAFNLPSNVDQSDAQSRWQDAHLNP
DQRDFSLADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFYHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNYEVINRSQGLDEVLARLDPRTATKHFTAIQRWKAKRELACPRRGAFLSFS
QKKLAKLKQTAEPDAAKVQLVEQWHSLDEASRSKYSKKSSRCPEPSLGLLRPDVCFGSVS
ENFYNITEKYLQSRTDQDSLDTHSLRQLLHYKWQRSLCDPGEAVGLLAAQSIGEPSTQMT
LNTFHFAGRGEMNVTLGIPRLREILMVAGSNIKTPMMSVPVLNTKKALKRAKVLRKKLTR
VCLAEVLQKVDVVETLRIESASHHKVRTFKVTFHFLPPDRYSDDKLLSPKQILHYMETRF
FRLLLEAIKKRSAKLASIAVETRKATLRDKDYDGEGTADIAGAEDGEGEEEREIVDDQGN
EGDADASDAKRKDKQEEEVDYESEEEEGDDGGEDKEDAGGEEEETQDSESRNAESSNVEA
PELAGLTPERKRKRERRTREGEREGEGEGSLSQMRVNAVLTSNPAIEGYCYDNEHELWCE
VDLVLPVSKVHFDLTSVLSTLAQNAVIMETRGLTRCLLSENTTKTGEKEMVLNTEGINMH
EMFKHSDILDINRLYSNEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVAD
YMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDELVSPSACLVVGKVV
KGGTGLFELKQPLQ
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagatgtgccatggcggcgcatggagggcatgtcgttcggcttgtat
tcagccgaagagataagaaagttgagcgtgaagacgatcaccaacttcaggttcctcgat
gctgttgggaatgtggccccaaacagcctgtatgatctggccctgggaccagcagacaac
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtccgggacattttggacac
ttagagctacctctgcctgtgtacaatccactgttttttgataaactctacctgttgatt
cgtggctcatgtctgttgtgtcacatgttaacatgtcccagagctgccatccaccttctg
ataaaccagattaagttagtggaccacggagccatgcgggaggtctaccaagcagagcaa
gttctcaaccagaccctggaggcaaatgccaaagccactggagatgagattgagcaggcg
ctgaaagagttcacagattcaataattggagcaaacgctgaagcttcagagaacagcaaa
ccgattaaacacctcgttgaaatgaagagcagtctgataaatgacttctggaaaatccac
atgaaaacaaggaagtgtccttactgcaggagcgggcggtttacagtacgtcgtgaacac
aacagtaaactaattgtcacaatgccatcaggagcacaaactgatggtaattctgacgag
gacctgatggctggaaagagagtctacttgacagccagtacagccagggaacacagcaac
aagctctgggagaaagaaggtttcttccttaagcacctgttctctgggctagaggcgggc
ccggggttgggggtgggagaaagcgttttctatccggacctcttctttctggagctgctg
gtggtcccaccttgcaggtatcgtccaatcaatcgactgggcgaccagatgttcactaac
ggacagacggtcaacatgcaggctgtcatgaaggactgtggagtcataaggaaacttctg
gctcttatagcgggcgagaaaaccacagaggaggaagaggctcctgaacagacagaccag
tcatttctgtctgggattccaggtgtgtcattaacagataaactctacaatgtctgggtt
cgcctccaaactcgtgttaacatcgtcttcgacagcgacatggacaaaatgatgtcagag
aaataccctggaatcagacagatcctggagaagaaggacggattgttccggaaacacatg
atgggcaaacgagtggactacgctgcacgatctgtcatctgtccagacatgtacataggg
accaatgagataggaatacctatggtgtttgccaccaaactgacctacccacagccggtc
actccatggaacgtgaaggaactccgtcaggccgtccttaacgggcctaacgtccatcct
ggtgcttccatggtgataaacgaggatggcaggagaaccatcctatctcccaccaatctt
gcacagagagaagcagttgccaagcaactgctgacgccctgtccaggcgtccataaaatg
gccatgaagatagtaaatcgacatattaagaacggagatgttttgttactaaacagacag
ccaactctgcacagaccctcaatacaggcccacagcgctcgcatcttacctggagagaag
gtactaagactccactacgccaactgcaaagcgtacaatgccgactttgacggagatgag
atgaatgctcactttcctcagagcgagttagccagagccgaggcctacacgttagtcagc
actgaccagcagtacctcgtccccaaggatggtaaacctttggcaggtctgatccaggac
cacatggtgtctggtacgaggatgaccatacgaggctgtttcttcaccagcgaccagtac
cacgagctggtatacagaggactgactgacaaaccaggcagagttaaactgctgccaccg
gccatatttaaaccacagcgtctatggacaggaaagcagttggtgtccaccctcctgctc
aatgtaatcccagacaaagcggtgcctctcaacctggtgggcaaatcaaaaatccccagc
aaagcatggatccaagaaccaccacgactcgctccaggatacaaacctgacagcatgtgt
gactcacaggtggtgattcgtcagggggagctattagtaggtgttctggacaaagctcac
tacggttcctcagtctacggtctggtccactgttgctatgagctgtacggaggggaaacc
agcggcaaactgctcagctgtctggcccgactcttcaccgcctacctgcagctatacaga
ggcttcactctgggtgtggaggacatcctggtgaaaccgggtgccaaccggcagaggaaa
aagattatccaggaatcactgaagattggcaccaaagccctccaggcagcattcaacttg
ccctccaacgtggatcagtctgatgctcagagccgctggcaggacgctcacctcaacccc
gaccagagagacttcagcctggctgaccacaagttcaaagaagtggccaaccaagtgaac
aacgacattaacaaggtgtgtatgccagtcggcctccacacctcttttccagacaacaac
ctccagctgatggtccaatcaggagccaagggttctacagttaacaccatgcagatctca
tgtctactgggtcagatcgaattggaaggccgtagacctccactgatgccttctgggaag
tcattgccgtgtttccagccatatgacccggcgcctggtgctggggggttcgtttctgga
aggttcctcacaggcatcaaaccacaggagtttttctaccattgtatggctggcagagaa
ggactggtggacacagctgtgaaaacatctagatcaggatacctgcagagatgtgttatc
aagcatctggagggtttggtagtacagtatgatcttacggtgagggatagcgacggatct
gtggtccagttcctgtacggtgaggacggcctggatatccccaagactcagttcctgcaa
ccaagacagttccccttcatagaggataactacgaggtcatcaacaggtctcagggtctg
gatgaagttttggcacgtttggaccctcggactgccactaaacattttacggccatccag
cgctggaaagcaaagagagagttggcctgtccacggagaggagcgttcctgtcattttcc
cagaagaagttggctaaactaaaacagacagcagagccagatgccgctaaagtacagctg
gtagagcagtggcattctctggatgaagccagcaggtcaaaatacagcaagaagtcctcc
cgctgccccgagccctctctgggcttgttaagacctgacgtctgcttcggatcagtgtct
gaaaacttttataacatcacagagaaatatctgcagagcaggacagatcaagacagcctg
gacacacacagccttcgccagctgctgcactataaatggcagcgttcactgtgtgaccca
ggagaagctgtgggtctgctggcggcccagtccatcggtgagccctccacccaaatgacc
ctcaacaccttccactttgccggcagaggagaaatgaacgtaactctgggaatacctcga
ctgagagagatcctgatggtggccggctccaacatcaagactcccatgatgagcgtgcca
gtgctgaacactaagaaggccttaaagagagcaaaggtgctccgcaagaagctcacaagg
gtttgtctggccgaggtgctgcagaaagttgatgttgtagagactttgcggattgagagc
gcctctcaccacaaggtacggacgttcaaagtcaccttccacttcctgcctcctgaccgg
tacagtgacgataagctgctgtcgcccaaacagatcctccactacatggaaactaggttt
ttccgtcttctcttggaagccattaagaagcgcagcgccaaactggcctccatcgccgtg
gagacgaggaaggccaccctcagggataaagactatgatggcgaaggaacggctgacata
gcaggggcagaggatggagagggagaagaggagagagaaatcgtggatgaccaggggaac
gaaggagacgccgacgcatcagacgccaagcgaaaagacaaacaggaagaggaagtggac
tatgagagtgaggaggaggaaggagatgatggtggcgaagataaagaagacgcagggggg
gaagaagaggagacgcaggattcagagagcaggaacgcggagagcagcaatgtggaggcg
ccagagttagcaggattaacaccagagaggaaaaggaagcgagagaggagaacgagagaa
ggagaaagagaaggagaaggagaagggtcccttagtcagatgagagtgaacgctgttctg
acttccaacccagcaatagagggatactgttacgataacgagcatgaactctggtgtgag
gtcgacctggtgttgccggtgagcaaggtgcacttcgacctcacctcagtcctgtcgacg
ctggcacagaacgccgtcatcatggaaaccaggggcctgactcgctgcctgctgagcgag
aacacgacgaagaccggagaaaaagagatggtcctcaacacggaggggatcaacatgcac
gaaatgttcaaacacagtgatatcttggacatcaacaggctgtactccaatgaagtccat
gccatggcgaaaacctacgggattgaagtggctttgaaggttatagaaaaggagatcaaa
gatgtttttgctgtctatggtatcgaggtggatcccagacacctgtcgctggtagcagat
tacatgtgcttcgaaggagtatacaagccattaaaccgacacgcaatccggtccaactcc
tcccctctgcagcagatgacgtttgagacgagctacaaattcctcaaacaggccaccatg
ctgggatcacatgatgagctggtgtcaccctctgcctgcctggtggtggggaaggtagtc
aaaggtggaacaggactatttgaactcaaacaacctctgcagtaa
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integrated database retrieval system
