Scomber japonicus (chub mackerel): 128363127
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Entry
128363127 CDS
T09718
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03020
RNA polymerase
sjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128363127 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
128363127 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128363127 (polr2b)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128363127 (polr2b)
Enzymes [BR:
sjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128363127 (polr2b)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128363127 (polr2b)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128363127 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
128363127
NCBI-ProteinID:
XP_053180013
LinkDB
All DBs
Position
8:34508603..34530012
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAFTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaggacgaagataatcaatatgatgaggatgaggatgaaatcactcctgat
ctgtggcaggaagcctgctggatcgtcatcagctcgtactttgatgagaagggtctggtg
cggcagcagctcgactcgttcgatgagttcatccagatgtcggttcagaggatcgttgaa
gacgctccgcccatcgacctgcaggctgaagcccagcacacgtctggagaggtggaggag
ccgcctcgctacctgttgaagtttgagcagatttatctctctaagccgactcactgggag
agagacggagctccgtcccccatgatgcccaacgaggcccggctcaggaacctcacgtac
tcggcccccctgtacgtggacatcactaagaccattataaaggagggggaggaccagctg
cagactcagcaccagaagacgttcatcggtaagatcccgatcatgctgcggtccacgtac
tgcctcctcagcggcctcaccgaccgagacctctgcgagctcaacgagtgcccgctggac
ccgggggggtacttcatcatcaacgggtccgagaaggtgctcatcgctcaggagaagatg
gcgactaacaccgtctacgtgttcgctaagaaagattctaagtacgcgtttacgggcgag
tgccggtcctgcctggagaactcgtcccggcccaccagcaccatctgggtcagcatgatg
gcccgcggaggacagggagtgaagaagagcgccatcgggcagaggatcgtgtccacgctg
ccgtacatcagacaggaagttcccatcatcatcgtgttccgggcgctgggcttcgtgtcg
gaccgagacatcctggagcacatcatctacgacttcgacgacccggagatgatggagatg
gtgaagccgtctctggacgaagcgttcgtgatccaggagcagaacgtggcgctgaacttc
atcgggtccagaggagcgaagccgggcgtgacgaaggaacgaagaatcaaatacgctaaa
gaagttctgcagaaggaaatgctgccgcacgtcggagtcagcgacttctgcgagaccaag
aaggcttatttcctggggtatatggtccacaggttgcttctcgctgctctgggtcgccgt
gagcttgacgacagggatcactatggcaacaagagactggacctcgccgggccgctattg
gccttcctgttcagagggatgtttaagaacctgttgaaggaaatccggatctacgctcag
aagttcatcgaccgagggaaagacttcaacctggagctcgccatcaagacccggatcatc
tcggacgggctgaagtactctctggccacggggaactggggcgacgtgaagaaggcccac
caggcccgggccggcgtgtcccaggtgctgaaccggctcaccttcgcctccacgctgtct
cacctgcgtagagtcaactctccgatcggcagagacggaaaactagctaaaccccgacag
ctgcacaacactctgtgggggatggtctgtcccgcggagacgcccgagggccacgctgtg
gggctggtgaagaacttggccctgatggcttacatctctgtgggatcacagccgtccccc
atcctcgagttcctggaggagtggagcatggagaacctggaggagatctcacctgccgcc
atcgcagacgctacgaagatcttcgtgaacggctgctgggtcgggatccacaaagacccc
gaacagctgatgaacacgctgaggaagctccgccgccagatggacatcatcgtgtctgag
gtgtccatgatcagagacatcagagagcgggagatcaggatctatacggacgccgggagg
atctgccggccgctgctgatcgtagagaaacagaaacttctgctgaagagacgtcacatc
gaccagctgaaggagagagagtacaacaactacagctggcaggacctggtggcgagtggt
gtggtggagtatattgacacgctggaggaggagacggtgatgctggcgatgacccctgat
gaccttcaggagaaaggagtggcttactgctccacgtacactcactgtgagatccacccg
tccatgatcctgggggtctgcgcctccatcatccccttccccgaccacaaccagtctccc
aggaacacgtaccagtctgctatgggcaaacaggcgatgggcgtctacatcactaacttc
cacgtgcggatggacacgctggctcacgtcctctactaccctcagaaaccgctcgtcacc
accaggtccatggagtacctgcgcttcagagagctgcctgcaggtattaactccatcgtg
gccatcgcctcgtacacgggttacaaccaggaggactcagtgatcatgaaccggtctgcg
gtggaccgagggttcttcaggtccgtcttctatcgatcctacaaagagcaggagtccaag
aaaggcttcgaccaggaggagatctttgagaagccgacgcgtgaaacctgtcagggtatg
agacacgccatctacgacaagctggacgacgacggcctgatcgcgcccggcgtgcgagtc
tccggcgaggacgtgatcatcgggaagacggtgacgctgccggagaacgacgacgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctcaggaccagcgag
accggcatcgtggaccaggtcatggtgaccctgaaccaggagggatacaagttctgcaaa
atcagggtgcggtcggtccggattcctcagatcggggacaagttcgccagccgacacgga
cagaagggaacctgcgggatccagtacagacaagaggacatgccgttcacctgcgagggg
atcacgcctgacatcatcatcaacccgcacgccatcccgtccagaatgacagtcggccat
ctgatcgagtgtctgcagggaaaggtgtcggcgaataaaggcgagatcggagacgcgacg
ccgttcaacgacgccgtgaacgttcagaaagtatcgaacctgctgtcagagtacggatat
cacctgagaggcaacgaggttctgtataacgggttcacggggaggaagctgacgtctcag
atcttcatcgggccgacgtactaccagcgtctgaaacacatggtggacgataagatccac
tccagagcccgcggcccggtccagatcctcaaccgccagcccatggagggccggtcccgg
gatggaggtctccggtttggtgagatggagcgtgactgtcagattgctcacggcgccgct
cagttcctgcgtgagcgtctgtttgaggcgtcggacccgtaccaggttcatgtgtgtaac
ctctgcggcctgatggccatcgccaacacacgcacacacacctacgagtgtagaggctgc
aggaacaagactcagatctcattggtcaggatgccgtacgcctgcaagcttctgttccag
gaactgatgtcgatgagcatcgctcctcgtatgatgacatcatag
DBGET
integrated database retrieval system
