Scomber japonicus (chub mackerel): 128363280
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Entry
128363280 CDS
T09718
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo02010
ABC transporters
sjo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128363280 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128363280 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sjo02000
]
128363280 (abca1b)
Transporters [BR:
sjo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
128363280 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
128363280
NCBI-ProteinID:
XP_053180211
LinkDB
All DBs
Position
8:34225915..34274012
Genome browser
AA seq
2274 aa
AA seq
DB search
MSVTTQLGLLLWKNYTYRRRQTLQLFVEIIWPLLIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWLQGILCNANNPCFRSHTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
NLEGFKELAQALQALQSSQSGFKLKHFLRDNETLSSFLLKNATLREHSVQQIINADVHLE
KVLLKGYGAHLRDMCPRKGGQRSVDDFVTISDPQVLMLVQEVLCRAPPIWLDHAEEHFLS
NLDFLKPIRRDVKADPEAVKQVALATNSLLDSLGSLAVELAGMKSWIDLRNEILFLTQNA
TSSPSTMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDEPMSLYDNSST
PYCNSLVKNMDSNPMSRMIWQALKPLLMGKILYTPHTPATQRVIHEVNRTFQELGVFRDL
GGMWEEMRPKVWNFMENSEQMDLIRTLLRNNVTAKVFHAQLSETDWTVTDVSKFLSKQAE
DHRPAGSALTWRDVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESMLLLEDRKFW
AGIVFPDVAANATELPPKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGF
SYLQDVIEQGIIRAMTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVA
IILKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLLKKGNLLPYS
DPGVVFLFLGSFAVVTIMQCFLLSTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGY
GAKVFASLLSPVAFGFGCEYFALFEEQGVGIQWKNLVSSPLEEDDFSLRSAIVMMYVDSF
LYGVLTWYIEAVFPGQYGIPRPWYFPFTKSYWLGQKDAKSTKVPQSRKGNREAVCIEEEP
AHIEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPP
TSGTAYILGRDIRTELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKGEI
EQILQDTGLPHKRNARTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWD
LLLNYRQDRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKK
EPEPSLSSRRNSSSTASFTKKEESASVSSSDAGLGSEHESEAATIADVSLVSGLIRRHVP
AARLVEDQGHELTYVLPYSAAKDGAFVKLFQDLDGKLADLGISSYGVSDTTLEEIFLKVA
EDNGVDTEVPSDGTLPVRRRRRTHAFGGGDHQSCLKPLTEDDNNDCNESEGDPECRETDW
LTCSDGKGSAQVSGWSLKKQQFIALMWKRFLFARRSRKGFFAQIVLPAVFVCIALVFSLI
VPPFGKYPSLELQPWMYEDQVTFISDDAPGDANMQKLLNALQDAPGFGTRCMDGYSIPEA
PCTMGDEDWLIPEVPESVQQIFSSGNWTMRDPSPACSCTCDGKKRMLPECPPGAGGLPPP
EMKLSATDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGGFSLGARSTQVLPP
ANEIDDAIKRVRKIFELKKGAAADRFLDSLSGFINGLDTKNNVKIWFNNKGWHSIGSFIN
VMNNGILRANLPEGADPSKYGISAFNHPLNLTKEQLSQVALVTTSVDVLVSICVIFAMSF
VPASFVVFLIQERVNKAKHMQFISGVQPLLYWVANFIWDMCNYIVPATLVVIIFICFQQK
AYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSISTFV
MELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLEWD
MVGKNLFAMAVEGAVFFIITVLIQYRFCIKPRPVSTLTKLGPLGEEDEDVARERQRIVHG
LGHGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLV
TSGEAFLAGKSILREIDAVHQQMGYCPQFDAINELLTGREHLELYAILRGVPEKEVCDVA
EWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWN
CIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRV
AGPDPDLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLAHIFSILAKNKTTLRIED
YSVTQTTLDQVFVNFAKDQSDDYHSKDASVRRKDVSINVPALSSGQAACRESVM
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttactactcagctgggactgttactgtggaagaactacacataccgccgcaga
cagacgctccagctcttcgtggagatcatctggccgctcctcatcttcttcatcctcatc
gctgtgcggctcaactatcctccatacgagcagcatgagtgtcacttccccaacaaggcg
atgccgtcggctggcacgttgccatggttacagggaatcctctgcaacgccaacaacccg
tgtttccgcagtcacacgccgggcgagtcgccgggtgtcgtcggaaacttcaacgactcc
ataatctctcgtctgttttcggacgctaagaagattcttctctacagtcagaacgataaa
aacctggaaggcttcaaagagctggcccaggccctgcaggcgctccagagcagccaatca
ggcttcaagctgaaacacttcctgcgtgataacgagactctgagcagcttcctgttgaag
aacgctacgctgcgtgaacacagcgtgcagcagatcatcaacgccgacgttcatctggag
aaggtcttgctcaaagggtatggggcccacctgagggacatgtgtcccaggaaggggggc
cagcgcagcgtggacgacttcgtgacgatctcggaccctcaggtgttgatgctggtacag
gaagtcctttgtcgggcgccgcccatctggctcgaccacgcggaggagcacttcctgtcc
aacctggacttcctcaaaccgatccggagggacgtgaaggctgaccctgaggccgtcaaa
caggtcgccctggcaaccaacagcctcctggacagtctgggctcgctggccgtcgagctg
gccggtatgaagagctggatcgacctgaggaacgagatcctgttcctgacgcagaacgcc
acgtcgtcccccagcaccatgtaccaggccgtgtctcgcatcgtgtgcggtcaccctgaa
ggcggcggcctgcagatcaaatccctcaactggtacgaagacagcaactacaaggctctg
ttcgggaaccacaacagcagcgaggacgaacccatgtccctctacgacaactcgtccact
ccgtactgtaacagtctggtgaagaacatggactcgaacccgatgtcccggatgatctgg
caagctctgaaaccgctgctgatgggaaagatcctgtacactcctcacacccccgctact
cagagggtcatccacgaggtgaaccggacgttccaggagctcggtgtgttcagggacctg
ggaggaatgtgggaagaaatgagacccaaagtgtggaacttcatggagaacagcgagcag
atggacctgatcaggacgctgctgaggaacaacgtcaccgccaaagtcttccacgctcag
ctgtctgaaaccgactggaccgtaaccgacgtctccaagttcctgtccaagcaggcggag
gaccatcggccggcaggaagcgctctcacctggagggacgtgttcaacgagacggaccag
gccatcatgagcatctcccgcttcatggagtgtgtgaacctggacaagctggagccggtc
tccaccgaggagaagctggtcaacgagtccatgctgctgctggaggacaggaagttctgg
gccgggatcgtgttccccgacgtcgccgccaacgccaccgagctgccgcccaaactcaac
tacaagatccgcatggacatcgacaacgtggagcggaccaacaagatcaaagacgcgtac
tgggacccgggtcctcgtgctgacccgtttgaggacatgcggtacatctggggcgggttc
tcctacctgcaggacgttattgagcaaggcatcatcagggcgatgacgggcaccaaggag
aagacgggcgtctacatccagcagatgccgtatccgtgttacgtggatgacatcttcctg
cgggtgatgagccgctccatgcctctcttcatgactctggcctggatgtactcggtggcg
atcatcctgaagagcgtcgtgtacgagaaggaggctcggctgaaggagacgatgaggatc
atgggtttggataacggcatcctgtggttcagctggttcatcagcagcctgattcctctg
ctgatcagcgccgggctgctggtgctgctgctcaagaaagggaacctgcttccatacagc
gacccgggtgtggtcttcctgttcctgggatccttcgccgtggtaaccatcatgcagtgt
ttcctcctcagcacggcgtttgctcgtgctaacctggcggccgcctgcggagggatcatc
tacttcacgctgtacctgccctacgtgctctgcgtcgcctggcaggactacatcggctac
ggagccaaagtcttcgctagcctcctgtctcccgtggcgttcgggttcggctgcgagtac
ttcgctctgttcgaggagcaaggagtcggcatccagtggaagaacctggtgtcgagtccg
ctggaggaggacgacttcagcctccgctccgccatcgtcatgatgtacgtcgactccttc
ctgtacggcgtcctcacctggtacatcgaggccgtgttcccagggcagtacgggattcct
cggccgtggtatttccccttcaccaagtcctactggctcggacagaaagacgcaaagtcc
accaaagtccctcagagccggaaaggaaaccgggaagctgtgtgtatcgaggaggaaccg
gctcacatagaacccggcgtttacatcgagaacctggtgaaggtttaccgccacgggaag
aagctggcggtggacggactgacgctcggcttctacgagggacagatcacctccttcctg
ggacacaacggagccggaaagaccacgaccatgtccatcctgaccggcctgttcccgccc
acttcgggcaccgcctacatcctgggcagagacatccggaccgagctgagcgccatccgc
cagagtctgggagtctgtcctcagcacaacgtcctcttcagcatgctgaccgtggaggag
cacatctggttctacgcccggctcaaaggtctgtcggaggagcaggtgaaaggtgagatc
gagcagatcctgcaggacaccggcctgccgcacaaacgcaacgccaggaccagcacgctg
tccggcggcatgcagaggaagctgtctgtggcgctggccttcgtcggagggtcaaaggtc
gtgatcctggacgagcccacggccggagtcgacccatacgcccgcagaggaatctgggat
ctgctgctgaactacagacaggatcggaccatcatcctgtccacgcaccacatggacgag
gcggacatcctcggcgaccgcatcgccatcatctcccacgggaagctgtgctgcgtgggc
tcgtctctgtacctgaagaaccagctggggaccggctactacctgacgctggtgaagaag
gagccggagccgtcactcagctcccgcaggaactcctccagcactgcgtccttcaccaag
aaggaggaatccgcctcggtcagcagcagcgacgccggactcggcagcgaacatgaaagt
gaggctgccaccatcgcggacgtgtccctggtctccggtctgatccggcgtcacgtcccc
gccgcccgcctggtggaggatcagggacacgagctcacctacgtcctgccgtacagcgcc
gccaaggacggagccttcgtcaagctgttccaagacctggacggcaagctggccgacctc
ggcatctccagctacggagtgtctgacaccacgctggaggagattttcctgaaagtggcc
gaagataacggagtggacactgaagtaccgtcagatggtacacttcctgtccggcggcgg
aggaggactcacgccttcggaggaggagaccatcagagctgcttgaaacctttaactgag
gacgacaacaacgactgcaacgaatcagaaggagacccagagtgccgggagacggactgg
ctcacctgctccgatgggaaaggctccgcccaggtgtcgggctggagcctgaagaagcag
cagttcatcgctctcatgtggaagcgtttcctgttcgctcggcgctccaggaagggcttc
ttcgctcagatcgttcttcccgccgtgttcgtctgcatcgctctcgtcttcagtctcatc
gtccctccgttcggaaagtacccgagtctggagctgcagccctggatgtacgaggaccag
gtcaccttcatcagtgacgacgctcccggagacgctaacatgcagaagttactgaacgct
ctccaggacgctccgggcttcgggactcgctgcatggacggatattcaataccagaggct
ccgtgtacgatgggcgacgaggactggctcattcctgaagtcccagagagcgtccagcag
atcttcagctcagggaactggaccatgcgggatccgtctcctgcctgctcctgcacctgc
gacgggaagaagaggatgctgccggagtgtcctccaggagccggaggactgccgccgccc
gagatgaagctgagcgccaccgacacgctacagaacctgacaggaagaaacatctccgac
tacctggtgaagacctacgctcagatcatcggcaagagtttgaagaacaaagtttgggtg
aatgagttcaggtacggcggcttttcattgggcgccaggagcactcaggtcctcccaccg
gccaatgagatcgacgacgccatcaaacgagtccgaaagatctttgagctaaagaaggga
gccgctgcagatcgattcctcgacagtctgtcgggtttcatcaacggtttggacacgaag
aacaacgtgaagatctggttcaacaacaaaggctggcacagcatcggctcgttcatcaac
gtgatgaataacggcatcctgagagcaaacctgcccgaaggagccgatcccagcaagtac
ggcatcagcgccttcaaccatccgctgaacctcaccaaggagcagctgtcccaggtggca
ctggtaacgacctctgtggacgtgctggtgtccatctgcgtgatcttcgccatgtccttc
gtcccggccagcttcgtggtcttcctcatccaggagcgcgtcaacaaggccaaacacatg
cagttcatcagcggagtgcagccgctgctctactgggtggccaacttcatctgggacatg
tgtaactacatcgtcccggcaacgctggtcgtcatcatcttcatctgttttcaacaaaaa
gcctacgtctcctccaccaacctgccggtgctcgccctgctgctgctgctctacggctgg
tccatcacgccgctcatgtacccggcctccttcttctttaagatccccagcacggcgtac
gtcgtcctcaccagcgtcaacatcctgatcggcatcaacggcagcatctccaccttcgtc
atggagctgttcggaaacaacgagatcggaggaatcaatgacatcctgaagaacgtcctc
ctcatcttccctcacttttgtctcggtcgaggtctcatcgacatggtgaagaaccaggcg
atggccgatgccctcgagagattcggtgagaaccggttccgctctccgctggagtgggac
atggtgggaaagaacctgttcgctatggctgtggagggagccgtgttcttcatcatcacc
gtcctcatccagtacagattctgcatcaagcccaggccggtcagcactctcaccaagctg
ggtcctctgggcgaggaggacgaggacgtggcccgagagagacagaggatcgtccacggc
ctcggacacggagacatcctggagctccgccagctcaccaaggtgtttaagaggaagcag
aagccggcggtggatcgactgtgtgtcgggattcctcctggagagtgcttcgggctgctc
ggggtgaacggagcaggaaagacgacgacgtttaagatgttgacaggagacacgttggtg
acgagcggagaagctttcctggcggggaagagcatcctgcgtgagatcgacgccgtccat
cagcagatgggttactgtcctcagttcgacgccatcaacgagctgctgacaggaagagaa
catctggagctgtacgccatcctcagaggcgtccctgagaaggaagtgtgcgacgtggcc
gagtgggggatcaggaagttgggtctggtgaagtacgcggataaagcagcaggaagttac
agcggaggaaacatgaggaagctgtcgaccgccatggctctgatcggagcgccgcccgtc
gtcttcctggacgaacccacgaccggcatggaccccaaagctcgcagagctctgtggaac
tgcatccacagcgtcatcaaggagggacgctcggtggtcctcacctcacacagcatggag
gagtgtgaggctctgtgtaccaggatggccatcatggtgaacggcaggttcagatgtttg
ggcagcgtccaacacctgaagaacaggtttggggacgggtacaccatcatcctgagggta
gcgggtcccgacccggacctacttcctgtgatgaagttcatagagagcgagctgagcggc
agcacgctgaaggagaaacatcgcaacatgctgcagtaccagctgccttcatctctcacc
tcactcgctcacatcttctccatcctcgccaagaacaagaccacactcaggatagaagat
tactctgtgacccagaccacactggaccaggtgtttgtgaactttgctaaggaccagagt
gacgactatcactccaaagatgcgtcagtgaggaggaaagacgtttccatcaacgttccc
gctctgagctcgggtcaggctgcgtgcagagagagcgtcatgtga
DBGET
integrated database retrieval system
