Scomber japonicus (chub mackerel): 128363285
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Entry
128363285 CDS
T09718
Symbol
ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128363285 (ctr9)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
128363285 (ctr9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_19
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_17
TPR_10
TPR_7
TPR_11
ARM_TT21_5th
TPR_6
TPR_Slam
ARM_TT21_4th
ANAPC3
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
128363285
NCBI-ProteinID:
XP_053180222
LinkDB
All DBs
Position
1:22569928..22580257
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AA seq
1157 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALELNSKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
GYYREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKYQNTEVL
LYLARALFKCGKLQECKQMLLKARHVAPSDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLSKAGDKMRFDLALAASEARQCSDLLSQAQYHVARARKQDEEEKE
LRAKQEQERDLLRQQMLKEQEEKRSREVEEQKKLLEQRALYVEKTKNLLTFAEGSKEMAK
EKKKGGGGGGGRRKKGDMDEFVNDDSDEDLPLKKKKKRRKGGSGSEQEETEDGEKKSRKK
RRRPTKGGEDSDDEEGGSRPKKQRRPKERKKIEKAQPERMPPSLKGKIKSKAIISSSESS
SDEDGLKIAEDRNQRDSGSGSDDEGGHTKRIASDSDSDTGRNRSGSEAGSPQQRSAGSDD
DSGSDHRVKKRRVQRQSDSEQSDNESKRSRSGSEDESRPGSPVAASDRGSEAGSDNNNNR
SNNASEQEGSNNEDDSD
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggctctatcgagatccctttacgggacactgacgaggttatcgagcttgac
tttgaccagttgccagagggggacgaggtcatcagtatcctgaagcaggaacacacacag
ctgcatatatggatcgctttggcgttggagtactacaagcagggcaaaacggaggatttt
gtcaagcttttagaggcggctcgtattgatggaaacctcgactacagagaccatgagaag
gaccagatgacctgtctggacacattggccgcttactatgtccaacaagcccgtaaagag
aagaacaaagatgccaagaaagagctcatcacacaggccacgctgctctatacaatggca
gacaaaatcatcatgtatgatcagaaccatttgctgggacgagcctgtttctgcctcctg
gaaggagacaagatggaccaggcagatgctcagttccactttgtcctcaaccagtccacc
aataacatccctgccctgcttggtaaggcttgcatctccttcaataaaaaggactacaga
ggagctctggcatactacaaaaaggctctacgtacaaaccctggctgtccagctgaggta
aggctgggcatgggccactgtttcgtcaagctcaacaaactggagaaggctcgtttggct
tttggccgagcccttgagctgaattcgaagtgtgtgggagctcttgtcgggttggcagtt
ttagagctcaacaacaaggaggcagattccatcaagaacggagtccagctcttgtcacgg
gcgtacaccatcgaccccagcaaccccatggtgctcaaccacctcgccaaccacttcttc
ttcaaaaaggactacagtaaagtgcagcacctggccctccatgctttccataacacagaa
gtcgaggccatgcaggctgagagctgctaccagttagctcgctcctttcacgtgcaggag
gactatgaccaggcatttcagtattactatcaggccactcagtttgcctcgtccaccttt
gtcttgcccttctttggtctgggacagatgtatgtgtatcgaagagacaaggagaatgca
gcacagtgcttcgagaaggttttaaaagcctaccccaacaactacgaaactatgaaaatt
ctcgggtctctctatgcaacatcggacgatcaggaaaagagagatatcgccaagggtcat
ttgaagaaggtaaccgagcagtacccagacgatgtggaggcatggatcgagctggctcag
atcctggagcagactgacatccaaggagcactgtccgcctacggcacagccacccgcatc
ctgcaggagaaggtgcaggctgatgtcccccctgagatcctcaacaacctgggagctctt
cacttcagactgggcaacctgggagaggctaagaaatactttctagcatctctggaacga
gccaaagctgagggagagcatgacgagcattactataatgccatctctgtcactacctcc
tacaatctggctcggctgtacgaggctatgtgtgaattccacgaagctgagaaactctac
aaaaacatcctgagagagcatccaaactatgtggactgttatttgcgtctcggagcaatg
gcgcgtgacaaagggaatttctacgaagcttctgattggttcaaagaggccctgcagatt
aaccaggatcacccagacgcctggtcgctgatagggaaccttcacttggccaaacaagag
tgggggccaggtcagaagaagtttgagcgtattctgaagcagccgtccacacagaacgac
acctactccatgctggctctgggcaacgtgtggcttcagaccctgcaccagcccaccaga
gaccgggaaaaggaaaagagacaccaggatcgagccctggccatatacaaacaagtcttg
agaaatgacgccaagaacctctatgctgccaatggcattggtgccgtcctagcccacaag
ggctactacagagaggctcgtgatgtgtttgcgcaggtgcgtgaggccacggcagacatt
agcgatgtctggctaaatctggctcacatctacgttgagcagaagcagtacatcagtgct
gtgcagatgtacgagaactgcctgaagaaattttacaaatatcagaacactgaggtcctg
ctgtacctcgcaagggcactcttcaaatgtgggaaactccaggagtgcaagcagatgctg
ctcaaggcgcgtcacgtggcacccagcgacacagtgttgatgttcaatgtggcgctggtg
ctgcagcggctggccactctggtactgaaggatgaaaagagcaatttgaaggctgtgctc
agtgctgtcaaagagcttgaactggctcacaggtatttcagctacctcagcaaagctgga
gacaagatgaggtttgacctcgctctcgctgcatctgaagccaggcagtgctctgacctg
ctgagtcaggctcagtaccatgtggcacgtgccagaaagcaggatgaggaggagaaggag
cttcgggccaaacaagaacaggagagggacttgctgcgccagcagatgttaaaagaacag
gaggagaagcgaagcagagaggttgaggaacagaagaagctcctggagcagagagcgctg
tatgtggagaagaccaagaacctgctgaccttcgcagagggatcgaaagaaatggccaag
gaaaagaagaagggaggaggtggcggtggaggacgtcgtaagaaaggtgacatggatgag
tttgtcaatgatgactctgatgaggatctgccattgaagaagaagaagaagaggagaaag
ggtggcagtgggagcgagcaggaggagactgaggatggagagaagaagtcacgcaagaag
aggaggagacctactaagggaggagaggacagcgatgatgaggaaggaggatcacgaccc
aagaagcagcgtagacccaaagagcgcaagaagattgaaaaggcccagcctgagcgtatg
ccaccttctctcaaaggaaagatcaagtctaaggctatcatctcctcttctgagtcctct
tcagatgaggatggcctgaaaatagctgaagacagaaaccaaagagacagtggttcaggg
tctgacgatgagggtggccacacgaagcgcattgcatccgacagtgactctgacacaggt
aggaaccgctctggcagtgaggcgggcagccctcagcagcgctctgcaggctcagacgac
gactctggcagcgaccatcgagtgaagaagagaagggtacagcggcagtctgactcggag
cagtcagacaacgagagcaagaggagtcggtcaggatcggaagatgagtcccgacccggc
tcacccgtggcagcatcagaccggggatctgaagcgggatcagacaacaacaacaaccgc
tccaacaacgcatcagaacaagagggctccaacaatgaggatgacagcgattaa
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