Scomber japonicus (chub mackerel): 128363287
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Entry
128363287 CDS
T09718
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
KO
K16499
protocadherin delta 2
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128363287 (pcdh18b)
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Protocadherins
128363287 (pcdh18b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
128363287
NCBI-ProteinID:
XP_053180220
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All DBs
Position
8:3258742..3267988
Genome browser
AA seq
1239 aa
AA seq
DB search
MGAKMNQTKGNILSSALLKLLLFVAILHGVTGKTLKYKVYEEQKVGTVIARLKEDVAGVL
AKLPSSLTFRFRAMQRGSTPFLSVREEDGEISIGTKIDREKLCEKNLNCSIEFDVVTLPT
EYLQLFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRVPLDGAVDADVGENSLHTYS
LTPNNFFKIDVRTRTDGAKYAELVVMRELDREVQSNYQLQLTASDNGVPPKSGSTLLKIS
ISDSNDNSPAFDEQAYIINLLENSPLGTLIIDLNATDPDEGTNGKIVYSFSSHVSPKILE
TFKINPESGHITLIKKVDYETTASYELDVQAQDLGPNSIPGLCKIVVKVVDVNDNKPEIN
INLMTPGKEEVAYISEGAPVDTFIALVRVDDSDTGLNGEVVCRLHGHGHFRLQKTYEKNY
MILTNISLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVLDENDNPPRFEKSRYEVFKS
ENNSPGAYLMTVVASDPDLGTNGQVTYTIIDALIQGSPISTYVTIDPSNGAIYALRSFDH
EDVSRIAFTIQARDGGNPALSTNTTVLLTVLDENDNPPVIHSPSLRNHTAELPVWKYASP
GQLITALKVTDRDAGANGEVSCAIVGGNEDGLFVMDARRCELRTNASLEQAPRDVMEIRV
EVQDRGTSRLSTGALLRLSLQENMDILPPLYPTGSSQAPLDLSLIVIISLGAVCALLLIV
MVMFATARCSREKKDPRHNYNCRVAENSYQNHPKKPTRQIHKADITLVPTVNGTLPVRAH
PRSPSASPTPERGTLGSRQSHHSRQSLNSLVTISSNHVPENFALELAHATPPVEQVSQLL
SMLHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRESPMDR
LLGEGFTELYAPDGQHRTHAAMRLCTEECRVLGHSDQCWMPPLASPASSSSDYRSNLYIP
GEEARQPTDLSQDKTPQPCTDTGPARNQSFSTFGKDLNGEDGGEEEGGEDNRGEPTDEDL
CGTTSLLSEMSSVFQRLLPQGLDSYVQVTENQKGTSLSGVGVPMTGSLDRRRGHLPGKPN
PSVHQQGVAAWAANTHFQNPGSSIGPSGHHQGGSYHTLKPNTKLSCQSNSHKGSQAPKNS
PQNNGHTPKPHSSPLLTALVSPTMVQPSPAPVPVPVPLPGPSSKWLPAMEEIPENYEEDD
FDSVLSHLQGKRSDSRHELVDASELVAEINKLLQDVRQS
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgggggcaaaaatgaaccaaaccaaaggaaatatactctcttcggcactactcaaactc
ctgcttttcgtcgcaattttgcacggcgtcaccggtaagactttgaaatataaagtttac
gaggagcaaaaagtgggcacggttattgcacggttaaaggaggatgtagccggggttttg
gccaaactacccagttccctgacctttcggttccgcgctatgcaacgggggagtacgccg
ttcctgtctgtccgggaggaggacggagaaatcagcattggcaccaaaatcgaccgcgag
aagctttgtgagaaaaacttaaactgttcgattgaattcgatgtggttaccctcccgacg
gagtacctgcagctgttccatgtggaagtagaagtgctggacattaacgacaactcccca
cacttctcccgcgccatagtccctattgagatctccgagagcgcatccgtggggactcga
gtccctctggacggcgcagtggatgcagacgtcggggagaactcgctgcacacctactcc
ctcactccaaataacttctttaagatcgacgtgagaaccaggacggatggggccaagtac
gcagagctggtagtgatgcgtgagcttgaccgggaggtgcagtccaattaccagctgcag
ctcacggcctcggataatggtgttcccccaaagtctggctccactttgcttaagatcagc
atctctgactccaatgacaacagcccagcctttgatgaacaggcttatatcattaattta
ctggaaaactctccccttgggactctaatcattgatttaaacgccacagatccggacgag
ggcactaatgggaaaatagtctactcttttagcagtcatgtctcgccaaagatcttggaa
acatttaagataaacccagaaagtggacacattactcttatcaaaaaagtggactatgaa
accactgcttcctatgagctggatgttcaggctcaggacttgggccctaattccatccca
gggctttgcaaaattgtagtgaaagtggtggacgtgaatgacaacaaaccagagattaac
atcaacctgatgacgccaggcaaagaggaagtggcctatatttcagagggggcgcctgtg
gacaccttcatagctttggtgcgtgtggacgacagtgacacggggctcaacggggaggtg
gtctgtagactgcatggtcacggccacttcaggctccagaagacttatgagaagaactac
atgatccttaccaacatctcgctggacagggagaagaggtcagagtacagtctgacagtc
atagctgaggaccggggctcccccagcctctccaccatcaaacacttcaccgttcaggtt
ctggatgaaaatgacaatcctccacgttttgagaagagccgctatgaggtcttcaaatct
gagaacaactcacccggagcctacttgatgacagtggtggcctcagatccagatttgggc
accaatggccaggttacctacaccatcattgatgctctgatccaggggagccccatctcc
acttacgtcaccattgacccctcaaatggtgccatctacgccctacgcagctttgaccat
gaagacgtcagtcgtatcgccttcaccattcaggcacgagacggaggaaaccctgctctg
tctaccaacaccaccgtcctcctgactgtcctggatgaaaatgacaacccacctgtcatt
cactccccctccctccggaatcacaccgccgagcttccggtgtggaagtatgcatctccg
ggtcagctgatcactgcgcttaaagtaacagacagggacgctggtgccaatggagaggtg
agctgcgccatcgtcggcggtaacgaggacgggttgtttgtgatggatgctcggcgatgc
gagctcagaaccaatgccagcttggagcaggctccgagggatgtaatggagatcagggtg
gaagtgcaggacaggggcaccagcagactgtcaacaggggcgctactaaggctctccctg
caggagaacatggacatcctcccacctctgtaccccactggctccagccaggccccactc
gatctttccctcattgtcatcatctctcttggggcagtttgtgctctgctactcatcgtc
atggtgatgtttgccactgcccgatgcagccgtgagaaaaaagaccccagacataactat
aactgtcgtgtggcagagaacagctaccagaatcatcccaagaaacccaccaggcagatc
cacaaggcagatatcaccttggtaccaaccgtcaacggaactctgcctgtccgggcccac
ccacggtccccctcagcatcccctacacctgagaggggcaccctggggagcaggcagagc
catcatagccgccagtcactcaacagcctggtcaccatctcctctaatcatgtgccagag
aattttgccctggaactggcccacgccacacctcctgtagagcaagtctcacagcttctg
tccatgctccatcagggccagtaccagccacggccaagcttcagaggcaacaaatacacc
aggagctacagatatgccctgaacgagatggataagttcagtcttaaggacagcggccgt
ggagacagcgaggctggtgacagcgactatgaacctggcagggagtcgcccatggatagg
ctccttggtgagggctttactgagctatatgcccctgatggccagcacagaacgcatgca
gctatgaggctctgcacagaggagtgtcgggttctgggtcactcagatcagtgttggatg
ccccccctggcatcgcccgcctcatcatcctccgactaccgcagcaacctctacatccct
ggagaggaagcccgccaacccaccgacctatcccaggacaagaccccacagccgtgcact
gacaccggccccgcccgaaaccagagtttctctacctttggcaaggacctcaacggagag
gacggcggtgaagaagagggtggagaagataacagaggagagccgacagacgaagacctg
tgtgggaccacgtcgttgctgtcggagatgagcagcgtcttccagaggttgctcccccag
ggtctggactcatacgtgcaggtcaccgagaaccagaaggggactagcctcagcggggtt
ggggtaccaatgactggatctttagatcgcaggaggggacacctacccggcaaacccaac
ccctctgtccaccagcagggggtggcagcctgggccgccaacacccacttccagaaccca
ggaagcagcatcggcccatccggccaccaccagggtggcagctaccacaccctgaaaccc
aacaccaagctcagctgccagagcaacagccacaagggttcgcaggcgcccaaaaacagc
ccccagaacaacggccatacccctaaaccccacagcagccctctgctcacggcgctggtc
agccccactatggtgcagccttccccggccccggtgcccgtgcctgtgccactccctggg
ccttcctccaagtggctgccagccatggaggagatcccagagaactacgaagaggacgat
ttcgactctgtgctcagccaccttcagggcaagcgcagcgacagccgacacgagctagtg
gacgccagcgagctggtggctgagatcaataaactgttacaggatgtccggcagagctag
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integrated database retrieval system
