Scomber japonicus (chub mackerel): 128363297
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Entry
128363297 CDS
T09718
Name
(RefSeq) rab11 family-interacting protein 1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128363297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128363297
Membrane trafficking [BR:
sjo04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
128363297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
DUF4635
Motif
Other DBs
NCBI-GeneID:
128363297
NCBI-ProteinID:
XP_053180231
LinkDB
All DBs
Position
8:21982813..21997800
Genome browser
AA seq
1438 aa
AA seq
DB search
MMSLIDLDDDQRWVPTHVNVTVLRARGLRTKGKHGSRYLYTIIQVGKEKYTTGLVEKAAV
PEWNEECCFELLPGILEDGGRSSHPPGSGDLVLTVMHRVLIGLDVFLGQTIIPLDKIFQD
GICPRDEWFKLNSKAGRKEKERGELQVTVQFTRNNMTASMFDLTMKDKPRSAFGKLKDRV
TGKKRCDMESSSAIVPGRYAALSGSLGQPFGEERGGVVESRDVEIAEEKKSKVKEFFKGR
LRKSSDTKSCSSLASDSSVSSIASDNPGPPPSLGLLSDPPSSPIYTSKVRVDTHYGEADL
AKKVLTSQHTTKVLTHKRAFSDEASKITTAFPRANSTVESLKGQTMTQSKSSLCINGSHV
YDSEPSTPKSSGALPSKLVLLEKCSPLSRSLQNLTKRSEDRGSFAEGRRWSFDKMKKDEK
EEEKEAQTSSFSIQEAQTAMPTLSSAADSSDKGRKLRKTLFSGGRSDSLPAKTDVNQAGA
ASEGRLKGWFGSGDSQNKPRLEVSPKVESSSDVSPPFPPHSPVPPQCSSPSTSPTGHVSP
NDGNHTNPITPCSSPSSTPISPSNPFLPRLQRNPFFEELIAEESQRSPPYAPCSSSGSSP
FHYTTLPSQPCTPSSAHDVNATNMASIKRERPRPVAMQISLPALLSKETQHNSPSHSTPH
CMSESAGEWEDSFDAFASSRLNSPKGSLSQSQLKTSPTSPNSHSYLPVNNNHTQELQKCE
EEPPPLPPRRLLRTPVNEIFSDGWLHRGQELAVHKEACLLSQTGAASRQRGKEGECKRNT
PSVSPDPNTSSETSDSLSGHSQPSTTVTSPGCLSEEKTKKFKYEPLEDETDRWGGMLFEQ
DLYGRVCRGNYVQPKVNNHHLSLKTEETLGNKNACQNSGPKMLLDSEVTVADLLKLSSAA
PSQSGVTSTPVEEMESSTINPAETVCINNNVSFSLTLGDLNMNVNNLDFSFIDSDGSSQS
EVVDTLKGLNSLVPQESQIADIYQQETTVTTPEDMFTLKDTYIPDMNSSFEISALSNKLC
KVSPVCQGNCQDCRCELNNVAPQCNSRMISRDIATLSSKNQTSNPPEDKTRNVDYFKKKE
EDCDDNGNPQAKLARLQRADSMSGVVSARFRPKGVSRANSSGSLNTQNKSAEREFEQLLS
LVKNFSEVSEGPLSYQPTKSALSSLLELDKQANSIVDATDSVTGKPSEISFEDLHAKVAP
NLRTPSKSKIGQSLQEPEPSSPIPSALSLPADAQDKLHPTPVCCPSIHPSSVGLPSAGAS
TSLAPYTSFSSSYSTTFTTDQPLVDARHSLLPEETQPASNLPHQESRPHPVKPLTSSQSE
KKDGRSVLEKLKSTIHPGRTAHQAVAEPERSQEVTVDNSAQYQHLTNMELISLLLQQEMD
MQKQQAASEQQGAQLEKCEAELKKVKAQVRDLEDYIDNLLLRIMEQTPTLLQVRTRHK
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcactgatagatctggacgatgatcaacgatgggtgcccactcatgtcaatgtc
accgttctccgtgcaagaggactgcgaaccaagggcaagcacggcagccgctacctctat
accatcatccaggtggggaaggagaaatacacgaccgggctggtggaaaaggcggcggtg
ccagagtggaatgaggaatgctgcttcgagctgctgccgggcatcctggaggacggcggc
cggagctcccatcctccggggagcggggacctggtcctcacggtcatgcaccgggtgctc
atagggcttgacgtgtttcttggtcaaaccatcatcccgcttgataaaatctttcaggac
ggaatctgtccaagagatgaatggttcaagctcaactccaaggcaggaagaaaggaaaag
gaacgtggtgaacttcaggtgacagtccagttcacacgcaacaacatgacagctagtatg
ttcgatctcaccatgaaggacaaaccacggtctgcttttggcaagctcaaggatcgtgtc
acagggaaaaagagatgtgatatggagtcttcctctgccattgtgccgggccgctatgcc
gccctatcaggatccctcggccaaccgtttggagaggagagaggaggggtggtggagtca
cgagatgtggagatagcagaggagaagaagagtaaggtaaaagaatttttcaaaggaagg
ctgcgcaagtcgtctgacaccaagtcatgctcatcgctggcttcagatagcagtgtctct
tccattgccagcgataaccccggccctccacccagtcttggcctgctgtcagatcctccc
agctcccccatctacacaagtaaagtgagagtggacacccactatggagaggcagattta
gctaaaaaagtgctcaccagccagcacaccacaaaggtcctgacacacaagcgagccttc
agcgatgaagctagcaagatcacaacagccttccctcgagcaaatagtacagtggagtct
ctcaagggtcaaaccatgactcagtccaagtcttccttgtgtataaatggaagtcacgtc
tatgactccgaaccatcaactccaaagagttcaggtgccctcccgtccaagctggtcctg
ctggagaaatgctccccgctctctcgttctctgcagaacctcaccaagcgaagtgaagac
agaggttcctttgctgagggccgacgctggtcctttgacaagatgaagaaagacgaaaag
gaggaagaaaaggaagctcagacgtcatctttctcaattcaggaagcccagacagcgatg
ccaaccctctcctctgcggccgattcatccgacaaagggaggaaactaagaaagacgtta
ttctctggagggaggagtgattctctcccggctaagacagatgtgaaccaggctggtgca
gcatctgaagggaggctcaaaggctggtttggctccggtgactcccaaaacaaaccaagg
ctggaagtttctcctaaggtagaaagcagctcagatgtatcccctcccttccctcctcac
tcccctgtaccccctcagtgctcctctccttctacctcccccaccggtcatgtctcaccc
aatgacgggaatcacactaatccaatcaccccctgttcctctccctcctcaacacccatc
tccccctccaaccctttcctcccacgtttgcagcgcaaccccttttttgaggagctcata
gctgaagagtcgcagaggtcgcctccttatgcgccttgctcctcttctggctcatccccg
tttcattacactactctgccctcgcagccctgcactcccagctctgctcatgatgttaat
gctacaaatatggcttccataaagcgggagcgcccgaggccagtagctatgcagatatct
cttcctgcgttactatccaaagagacacagcataactcccccagccactccacccctcac
tgcatgtcggagagtgcaggagaatgggaagactcttttgatgcttttgcctctagcaga
ctcaactcacctaaaggaagtctttctcagagccaactgaaaaccagcccaacgtcccct
aatagccatagttatcttccagttaacaataatcacacacaagagctacaaaaatgtgaa
gaggagcctccacctttgcctccaaggagacttttaaggactccagtgaatgaaatattc
tctgatggttggctgcacagaggtcaagagctagctgtccataaagaagcttgcctcctg
tcacagactggtgcagcatcacggcagcgtggaaaagaaggagaatgcaaaagaaacaca
ccaagtgtctcaccagaccccaacaccagcagcgagacctccgattctctcagtggtcac
tcccaaccgtccaccaccgttacttcaccgggttgtttgtctgaagaaaagaccaaaaag
ttcaagtatgaacccctggaagatgagaccgaccgctggggagggatgttgtttgagcaa
gacttgtatgggcgtgtatgcagaggaaattatgtacagcccaaagttaacaatcatcat
ttgtcattgaaaacagaagagacccttggaaataaaaatgcatgtcagaactcaggacca
aaaatgcttcttgatagtgaggtgactgttgctgatcttttgaagttatcatctgctgct
ccttctcagtcaggtgttacttccactccagtagaagagatggagtcttccaccattaat
ccagctgaaaccgtatgcataaacaataacgtgtctttctcactaaccttaggagatctg
aacatgaatgtaaataatttggattttagtttcattgattcggatggatcctctcagtca
gaggtggttgatactctcaaaggcctcaatagtttagtgccacaagaatcacagatagca
gatatttaccagcaggagaccacagtgaccacacccgaagatatgttcactttaaaggac
acctacataccggacatgaactcttcctttgaaatatctgcattgtctaataaactatgc
aaagtctctccagtttgtcaagggaattgccaagattgtcgatgcgagctgaataacgtg
gcaccgcagtgtaactccaggatgatcagcagggacattgctactttgtcatcaaagaat
caaacatctaatccccctgaagataaaacaagaaatgttgattattttaaaaagaaagaa
gaagactgcgatgataatggaaacccacaagctaagctagccagacttcagcgggcagac
tcgatgtcaggggtggttagtgcgcgtttcagaccaaaaggagtgtccagggcaaacagc
agtggcagtctaaacacccaaaacaaaagtgcagaaagagagtttgaacagttgttgtcc
cttgttaaaaacttttcagaagtcagtgaaggaccattgtcttatcagcccactaaatca
gctctttcttccttactggaattagataaacaggcaaattctattgtagacgccacagac
agtgtgacaggaaaaccctctgagatcagttttgaagaccttcatgcaaaagtagccccc
aacctgagaaccccttcaaagtcaaagattgggcaatctttgcaagagcctgaaccctct
tctcccatcccctccgcactctccctgccagctgatgcacaggataagctccaccctacc
cctgtctgttgcccctccatacatccctcaagcgtggggctgcccagtgctggagccagt
acttctctggccccctacacctccttctcttcctcctactctaccaccttcaccactgac
cagcccctggtcgatgcacggcactcacttttgcctgaggagacacagccagctagcaac
ctgccccatcaggagagcagaccccatccagtgaagccattaacctccagccaatcagag
aaaaaggacggtcgttcagttctggagaaactcaagtctaccatccaccctggacgcacc
gcccaccaagccgtagctgaacctgagagaagtcaggaggtgacagtggataactctgcc
cagtaccagcacctgaccaacatggagctgatctccctgctgctgcagcaagagatggac
atgcagaaacagcaggcggcctccgagcagcagggggcacagctggagaaatgtgaggcc
gagctgaaaaaggtcaaggcgcaggttcgtgacttagaggactacattgataatcttttg
ttgcggatcatggagcagacacccacgctgcttcaagtgcgcactcgacataagtga
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