Scomber japonicus (chub mackerel): 128364083
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Entry
128364083 CDS
T09718
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03440
Homologous recombination
sjo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128364083 (top3b)
03460 Fanconi anemia pathway
128364083 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjo03032
]
128364083 (top3b)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128364083 (top3b)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
128364083 (top3b)
DNA replication proteins [BR:
sjo03032
]
Eukaryotic type
DNA Topoisomerases
128364083 (top3b)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
128364083 (top3b)
FA (Fanconi anemia) pathway
128364083 (top3b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
128364083
NCBI-ProteinID:
XP_053180546
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All DBs
Position
9:complement(39073082..39098706)
Genome browser
AA seq
858 aa
AA seq
DB search
MRTVLMVAEKPSLAQSIAKILSKGNCTSRKGLNGACSVHEYAGSFQGQPVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDK
EGENICFEVLDAIQPVMNKGGSREQTVYRAKFSSITDTDIWNAMNRLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WIIQAKVFKGKDSPLTLDWSRVRVFDRDVGQMFVNLAKTSREAKVESVSKKEKSKQRPQA
LNTVEMLRVASSSLGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGALKQQSNN
PMWSEEVRALLSDGINRPRKGNDAGDHPPITPMRAASEGELGSDGWRLYEYITRHFIATL
SQDCKYLQTTIDFSIGTEAFSCSGKTLISSGYTTVMPWQGIPLEEAMPVCERGDIFTVDE
IKLVEKQTGPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENGRKLKPTNL
GIVLVHGYYKTDAELVLPTIRSAVEKQLNLIAQGKANFQQVLQHTLDIFKRKFHYFVDSI
PSMDELMEVSFSPIAASGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDDFELVLWTSGARGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNS
LGIGQCVECDSGVLVLDPTSGPKWRMACNKCNVVVHFFEHAHRVQVAQESCDACDASLVA
VDFNKTRTPLPAGETQHTGCVFCDPVFQDLVELKHATMRHPMHRGGGARRGGRGRGRGRR
GNPKKPKDKMAALAAYFV
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagaactgttttaatggtggcagagaaaccctctttggctcagtctatcgccaaaatc
ctctcgaaaggaaactgtacaagtcgaaagggactcaatggagcgtgctcggtgcacgag
tacgccggcagcttccagggccaacctgttcgctttaagatgacttctgtttgcggacac
gtgatgagtctggatttcatcggcaagtacaacaactgggacaaggtggaccctgcagaa
ctctttagcaaagctcccacagagaagaaggaggccaaccccaaactcaacatggtcaag
ttccttcaggttgaaggtagaggctgcgactatgtggttttgtggctggactgcgataaa
gaaggcgagaacatctgttttgaggtccttgatgccatccagccagtgatgaacaaggga
ggaagcagggagcagactgtgtacagagccaaattcagctccatcactgacacagacatc
tggaacgccatgaaccgcctgggagaacccaaccgcaacgaagccctgtcagtggacgca
cggcaggagctggatctgcgcatcggctgtgccttcacaaggttccagaccaaatatttc
cagggcaaatatggtaatctggactcctctttgatctcatttggaccatgccagaccccg
accctgggcttctgtgtggaacgccacgacaagatccagtccttcaaaccagagacttac
tggatcatccaggcaaaggtgttcaaaggaaaggacagcccactgactctggactggagc
agggtaagggtcttcgacagagatgtgggccagatgttcgtcaacttggccaaaacatct
agggaggctaaggtggagtcagtgagtaagaaagagaagagcaagcagagaccccaggcc
ttgaacacagtggagatgttgagagtggccagctcttccctcggcatgggtccccagcac
accatgcagattgcagagcgtctgtacacacagggctacatcagctaccctcgtactgag
accacccactatcctgagaactttgatctgaagggagctctgaagcagcagagcaacaat
cccatgtggtcagaagaggtgagggctctgctttctgatggaataaaccgacccaggaaa
ggaaatgatgcaggggatcatccacctatcactcctatgcgtgcagcctcagaaggagaa
ctgggaagcgatggctggcggctatacgagtacatcacacgacatttcattgccactctc
agtcaggactgcaagtacctccagaccaccattgacttcagcattggcacagaggccttc
tcttgtagtggcaaaaccctgatatcatcaggttacaccacggtgatgccatggcaggga
atccctctggaagaggctatgccagtttgtgaacgtggagacattttcacagtagatgag
atcaagctggtggagaagcagaccggcccccccgactatctgactgaggctgaactcatc
acccttatggagaaacatggcattggtactgatgccagcatccccgtacacatcaacaac
atctgccagaggaactatgtgacagtagagaacggacgcaaattgaagccaaccaatctg
ggcatcgtcctggtacacggctattataagacagatgcagagctggtgctgccaaccata
cgcagcgctgtagagaagcagcttaacctgatagcgcaggggaaagctaacttccagcag
gtccttcagcacacactggatatcttcaagaggaagtttcactattttgtggattccatt
cccagcatggacgagctgatggaagtctccttttctcccatcgctgccagtgggaagcct
ctgtcccgctgcgggaagtgccaccgcttcatgaagtacatccaggccaaacccagcaga
ctccactgctcccactgtgatgaaacatacagtcttcctcagaatggagccatcaagctg
tacaaggagctgcgctgtccactggatgactttgagctggtgctgtggacctcaggggcc
cgaggcaagagttaccccctgtgcccctactgcttcagcaaccctcctttcagggacatg
aagaaaggtatgggatgtaatgaatgtacccatccatcctgccagcactctctcaactct
ttgggcattggacagtgtgtggagtgtgacagtggggttttggtgctggatcccacctct
ggaccaaaatggaggatggcctgtaataaatgcaatgtggtggtgcacttctttgaacat
gctcatagagtgcaggttgctcaggagagctgtgatgcctgtgatgcttctctggtcgca
gtggatttcaataagactcgcactccacttcctgccggtgagacccaacacaccggctgt
gttttctgcgatccagtcttccaggatctcgtggagcttaaacacgccactatgagacac
cccatgcatcggggtgggggtgcaagacgaggaggaagggggcgaggcaggggacgccgt
ggaaatcctaaaaaacctaaagacaaaatggctgccttagcggcttactttgtgtag
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