Scomber japonicus (chub mackerel): 128364284
Help
Entry
128364284 CDS
T09718
Symbol
skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein isoform X1
KO
K12600
superkiller protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128364284 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128364284 (skic3)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128364284 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_8
TPR_14
TPR_19
TPR_11
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
RPN7
Fis1_TPR_C
ARM_TT21_C
HAT_Syf1_CNRKL1_N
TPR_Slam
TPR_15
Aip3p_Bud6_N
HemY_N
TPR_BSK1_C
Motif
Other DBs
NCBI-GeneID:
128364284
NCBI-ProteinID:
XP_053180792
LinkDB
All DBs
Position
9:complement(25999986..26015787)
Genome browser
AA seq
1571 aa
AA seq
DB search
MMSSKEVKTALKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGLAASELEQPDQA
QTAYKKAVELEPEQLLAWQGLSNLYEKTDQWDFKAELSNVYQKLVELYASSDKTKCYEII
KKLSDIYQSDKEYSELAKVWQQLIQLKEEEGVDKKELLQLWQQMTHLLSECLNEEEQDNE
TQNHLITAFEKAMVLMDPVPGEEHRKTSADYVKCLSKLPQEEAKMKEACESMLSLYPTQS
YPLEILCSHYLKTGIQDEDSFSCFSRLLDLAPNSGLGHLGLGTKALKECRYKDAIKDLAQ
GLKKMSSSTGWYNLAQAQLNMHRYSDSATSCSQGLTVCVSGDVEQKVGLLKLRLEASVRS
GGEKAADQALETFSQIPNAAKDPVLVSLKGRAYLNKGQVDQALKVSSELLASDPNLAQGL
ALRGLVHLAEGQQQQAEQSFLKAAGQSPDCGEYYLLLGRLYWDMGEETRKDRGKVHTHLL
KAAKLDPHLGCVFRYLGHYYREVANDHGRARGCYKKAFDLDNDDAESGAASVDLSMAYED
MDTALAILQSVIEKATPGSAKWAWMRRGLYYLKVGQHQQAVADLQAALRADPEDWVCWEC
LGEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQQD
YVPALKGLGECQLSLAKSLMEDSRDGGAIDLIQQAIQNLFKAAELRPDLSCLWKLLGDAC
TAVSTVSPNRAQVQVPAPLAGVDTKTQSHMMDQAQTVKVGERCYARALKLMPEVPSLWYD
LGLNYYHQACLFCPTEVDQNSPSLLLEKAEQCLKKAIMMDSENHYFWNSLGVISMSKGLE
NFALAQHCFIKSIQVESSNVVAWTNLGTMYLKKDNIELAHEAFKIAQSLEPLYVNCWIGQ
ALIAERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNA
ISAAQVALSKYTERIQSDPDSFIMLGYLNEHLQLKRQALQAYQRAVELLQSMSSTEQLAF
AQGSYGRALCISGQCEEAVHIYKSTPLQELSDLAGLALAYCKAGLISESVNAYERALAMA
TSEKEKAYILTALALLQHRQGNIDSAKTLLFKCSMLKEPISESLLCLCALGLVNNDTTLA
TAALSELLKQGSSSGSVVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNASLWALLS
RVVPQYYPRKANGGAMAGHVACLSSMTQGKRALLYSGVNQLASGRHSGEHKHRNALKTMQ
KAVMLCPDDPATWAGLIAACHTENTSCYLSGSAPCRKGLEQTLMSVVSEKVRTVEEIERP
LAQSLEGWVLQQAVTGLMLGGQLEQAEALCSQVLNVSPEHPAVMLSLRQVQCQRLLVGND
GGTVLPESVLEQLSNTVMMNPTNLGAWHWLADVYRSQGLLVQAVMVYRQSLQIASQLGLH
SCQVTSLLRLALLALGPCMAGVPGNDWKDLVLEATTEVLKLGSCPMALLFQALLQYVTKM
TARDTRRLLEKLVYVSSQDFPVTVVQVASWYLLRHLHAKNDEELLNVLVEHAKMYGDQRL
LKFHAQLVSSS
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctagtaaagaggtgaaaaccgctctgaaaagtgccagagaggctataaaaaac
aaagagttcaaagaggctttgaaacactgcaaggccgttttgaaacttgagaagaacaat
tacaatgcatgggtgttcattggtttggcagccagtgaactcgaacaaccagatcaggca
cagacagcctataagaaggcggtggagctcgagcctgagcagctactggcatggcagggc
ttgtcaaatctttatgagaagactgatcagtgggatttcaaagctgagctttctaacgtc
tatcagaagctggttgagctgtatgcaagctctgacaaaaccaaatgttatgagatcatc
aaaaagctgtcagatatctaccagtctgacaaagaatattcagagttggcgaaggtttgg
cagcagctcattcaactgaaggaggaagagggtgtggacaagaaagagttactgcagcta
tggcaacagatgacccatctcctgtcagagtgccttaatgaggaagagcaagacaatgaa
actcaaaaccatttaatcacagcatttgagaaggccatggtactcatggatcctgtgcca
ggagaagagcacaggaagacctcagctgactatgtcaaatgtctttctaaacttccacaa
gaagaagcgaaaatgaaagaggcatgtgagtccatgctatctctctaccccacccagagt
tatcctcttgaaatcctttgttctcactacctcaaaacaggtatccaggatgaggactca
ttcagctgtttttcccggctccttgatctggcccctaacagtgggttaggtcacttgggt
ctcggcaccaaagcactcaaagagtgcaggtataaagatgccattaaggatcttgcacaa
gggttgaagaaaatgagctccagtacaggatggtacaatttggctcaggctcagctcaac
atgcatagatactcagacagtgctacatcatgctcccaaggtttgacagtgtgtgtttcg
ggagatgtggagcaaaaggttggactgctaaagctgaggcttgaggcttcagtcaggagt
ggaggggagaaggctgcagaccaggctttggagacattttcacagatccctaatgctgcc
aaagatccagttctagtctctcttaaaggacgtgcataccttaacaaaggacaggttgat
caagcacttaaggtgtcatcggagctgttggcctctgatccaaatctggcccaggggttg
gcactaagaggactggtacacttagctgaaggccagcagcagcaggcggaacagagtttc
ctaaaggcggcaggccaaagcccagactgtggagagtattatttattgctgggacgactc
tactgggacatgggagaagagacccgtaaagaccgtggcaaagtacacacacacttgctc
aaggctgcaaagttggacccacaccttggttgtgtattccgctaccttggacattattat
cgggaggtggcaaatgaccatggccgggcacgaggttgttataagaaggcctttgattta
gacaatgatgatgctgagtctggagctgcctcagtggatctcagtatggcatatgaggat
atggacactgccttagcaatacttcagtcagtgatagagaaggccactccaggctcggct
aaatgggcctggatgagacgagggctttactatctgaaggttgggcaacatcaacaggct
gttgctgatctgcaggcagctctgagagcagaccctgaggactgggtatgttgggagtgt
ttaggtgaggcctacctaaaccgccgtagtttcacagcagctctgaaggccttcggtaag
gcccatcagcttcaaccctcctccatctatagtgtctaccaggctgctgcaatcaaacag
acgttgggcaagttcaaagaggcggttgcagagtacttgcagatcacagcacagcaggat
tatgttcctgctcttaaaggtcttggggagtgccagctctctttggcaaaaagtttaatg
gaggattccagagatggtggagccattgacctcattcagcaagcaatacagaaccttttc
aaagctgcagagctacgtccagatctctcctgtttgtggaagcttttgggagatgcctgc
accgcagtcagcacagtgtctccaaacagagcccaggttcaagtgccagccccactagct
ggtgtagacaccaagacccagagccacatgatggatcaagcccaaactgtcaaagttggt
gagaggtgctatgctcgtgccttgaagctaatgcctgaggtccccagtctttggtatgac
cttggactcaactattatcaccaggcttgccttttctgccctacagaggtagaccagaac
tctccatcgctgctcctagagaaagccgagcagtgtttgaaaaaggctatcatgatggac
agtgagaatcattacttctggaattccctgggagtcatttccatgagcaaaggtcttgaa
aactttgctttggctcaacattgcttcatcaagtccatacaagttgaatcaagtaatgtt
gttgcctggaccaaccttggtaccatgtatctgaagaaggacaatatagagcttgcacat
gaggcctttaagattgcccagtcccttgagccgctgtatgtcaactgctggatcggacag
gcgctgatagcagagagagtgggaagctatgacaccatggatcttttcaggcacaccact
gaactcagcacacatatggagggagtgaaaggttatgcctactgggtgtgttccaccctg
ctggataagagcaaccgagactctgaactgtaccgctacaacatagtccagatgaacgcc
atctctgctgctcaggtggcactcagcaagtatacagagaggatccagtctgatccagat
tccttcattatgcttggttacctgaatgagcatctacagctgaagagacaggccttacag
gcttaccaaagagctgttgagctgcttcagtcgatgtcctccacagaacagctagctttt
gctcagggaagctatggtcgtgctctctgcatctcaggtcagtgtgaagaggctgtgcat
atttataaatccacaccactgcaggagctcagtgatctggctgggctggctctggcctac
tgcaaagcaggactcatatcagaaagcgtaaatgcctatgagcgtgccctggctatggct
accagtgaaaaggagaaggcctatatcttgacagctctggcattactgcagcaccggcag
ggtaacatagactcagccaagactctgctgtttaaatgttcaatgttaaaggagccaatc
tcggagtctctgctgtgtttatgtgcccttggattagtgaacaatgatactacactagct
actgctgccctgtctgagctgttaaagcaaggctcatcctctgggagtgttgtagaacag
cgatgtctactcacctgcactttgctggccctgcagggcaactacagtgcagtgcaaaga
gaagcttcgagagcggtacacagcaatccaggtaacgcatctttgtgggccctgctgtcc
agagtggtaccacagtactaccccaggaaggcaaatggtggagcgatggctggccatgtt
gcctgtctttccagtatgacccaaggaaagagggcgttgttgtacagtggagtgaaccag
ctggctagtggtagacactctggagaacacaagcacaggaatgcactgaagactatgcag
aaagctgtgatgctttgtcctgatgatccagcaacatgggcaggattaattgctgcctgt
cacacagaaaacacttcctgttacctctctggctctgctccttgcagaaaaggcctggag
caaaccctaatgtctgtggtttctgaaaaagtacgtactgtagaggagatagagcgccct
ctagcccagtctttggaaggctgggtactacaacaagcagtgactggtctcatgcttgga
ggacagctagaacaggcagaagctctctgctcacaggtgctaaatgtttctccagaacac
ccagcagttatgttgtcactgagacaagtacagtgtcagcgtctccttgtgggtaatgat
ggtggtactgtcctcccagagtctgtgctggagcagctcagcaacactgtgatgatgaac
cccaccaaccttggggcatggcattggctggcagatgtgtatcgtagccagggcctgctt
gttcaggcagtcatggtttacagacagagtctgcaaattgcctcacagcttggcctgcac
agctgccaagtaacgagcctgcttcgactagctctgctagctctaggaccctgtatggca
ggtgtcccaggaaatgactggaaggaccttgttttagaagccactacagaggtcttgaag
ctgggttcgtgccctatggccctcctcttccaggccctgctccagtatgttaccaagatg
actgcgagggacaccaggcgattgttggagaagctggtatatgtctcctctcaagacttc
ccagtgactgtcgtgcaggtggccagctggtacctcctcagacacctgcatgccaaaaat
gatgaggagctactgaatgtccttgtggagcatgccaaaatgtatggagatcaaagactg
ctgaagtttcatgcacagcttgtttcttcatcctga
DBGET
integrated database retrieval system
