Scomber japonicus (chub mackerel): 128364395
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Entry
128364395 CDS
T09718
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128364395 (vps13a)
Membrane trafficking [BR:
sjo04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
128364395 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
128364395
NCBI-ProteinID:
XP_053180901
LinkDB
All DBs
Position
9:complement(20821178..20862102)
Genome browser
AA seq
3282 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAILTNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEQEDPKLEKQDTFVEKLVTQVIKNVQVKISNIHVRYEDDVTNPNCPLSFGVSLK
NLSLQTSDKNWNPSLLDENAKLFFKLVQLDSLFAYWSVNSVLFSNHNAEEALRCLKNSME
IDSSYPVDHDFIFRPISAAAKLRMNPRSDVDFSSPKVDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKYRPVVQVHKNARVWWRYVITSILEVDVKPRLHMWSWQHIRRHRI
VVKRYRELYKTKITSKKPSEELLKQLEEPEKTLDIFNITLARQQAEVEASKAGLRIYRPG
MKMEEEESQGWLSWVWNWGGEPDTQEKEVKTGGSGFDELLTSAEKAKLYTAIGYSETAVN
SNLPKDFEDMKVNFHMEKLSVSIKDNKDKNEIITLTVGELMSTLTQRPGAQAIKITAKLS
LFEVTGLADKRPAPTLLSSRKAATGTGTPLLSILFETNPMDDSANQRLHVESQPLEIIYD
AITVNGMSAFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVLDLKVNLMAS
YVIIPQTGFYNATQNILLLDLGHFKMSSQSKKHLPQLSAGSSNIEDIMSRAYDSFDVQLS
SLQFLYSKPDGDWKMARKQKQSPLHILEPVDLKVVFSRAMVVKDSRMAKYKISGELPLLS
LRISDDKLRSVLELVESIPLPESKPRSAGPSSTQKSKQSFTPQLTPRRPLNLADQRSSLI
FESCETISITSLGSEEDLFYDAPSSPLGDKTFFPDNPMPLRYADLHKRKSLIKEDTQKNM
TDFVMTFEISEFSVQLCRLSGDQEVTVLHLDIEGLGTELKLRTFDMTSNTYLKEICLKCP
EYMDSEEKQVQLITTLDNTEVDLLTLEYIKADKNGPEFKSQHNNTEQLIKVTFSSLDVHL
HTEALLTTINFLNNLLPPSPKKEGGQEELPTIPEEEEAEGEREGEKKEENTVAKKKTSKS
SKFADIVNLHIRADLRCLKVFIRGEKARISEISIEGLVSEVLMRKKNMEVLANLKNIVIL
DCDNDAFYKKAVSIADKEVFAFRMVNYTDATEGDAYLDMSNVDTAVSLTVGCIQVIFLNK
FVSSILAFINNFQEAKDALAEVTVQAAEKAASGVKELAERSTRIALNVHFNAPIIFLPQS
STSSNVIVADLGFLSVKNSFVKQPFKDDAKIPPVVDRMTVRLTDLKMYRTTYINEGFQGE
TQLLMPVSLDLEIQRNLSSNWYHSIPDIEITAHLKPMSLILSQDDMTVVLRTLSENLSEK
SDVVPLPAPPPTTDPSSDCVSNKESQGSGTTGPASSNTVVTAAVVETQKNSKLKSTLKLD
FKFDSMTLVLYSPNGNEIQQLDSHDEQLKLAEFTLGTISTSIHMFSDSSMKASVRLATCL
LDDKRPKIKMVTPRMMELCPGAEQNMMVEVNYRQGRDGTTLDTVVQDVYLCASMEFLLTV
ADIFLKATQQGFAQVPQPKNSTGSGEKKNINSSITSKESTATQAVVSKTEMNVCVRNPEI
VFVADLTRADAPALVMTTQCELVMKSDAEGSQMTAVIKDLKVVACPFLREKRKNNVTTVL
QPCQVFFQSTQSSTSPQAMEVSINALTLKVSPIIINTVITIQSALTPTAETPEELESPVP
VDMWEKRGWKELKLWFLEEEGDEDIKSLVPLIPQGESLQVTIKSICLTLEAGVGHRTVPM
LLAKSSFHGDVTNWSTLINLHSELNLEVHYYNEMMGVWEPLLEPLEDETRDGFRPWTLKL
KMKKKPVKHTSWADEVDYNIPDYKTVIAISSKDQLNITLSKCGLAMLSNLGTAFAEAAKQ
TAECFQKDEAPFVVKNRLGLPVFVCHSEMFRPIGQQSTNRTVELQDGETLGMDYSTTTDS
DQFSAMTSLSGKDFYIQPTPVGHTSTSAIPLIKVGRGMYSVMHRESGVTRFLVCQIYSVE
GSKYIKIRSPFQIINHFSIPFKVFEGSTCLGTALPTEEFCVPLDSYRSELSIQPITEEDA
DNQGVQFDCSEGFSYEDVNNLQPDSRLQQTCRRRGELSGVLMVNIVPVTDTVTFKQTGVV
GEHFDVPFVLHLWPPILLRNLLPYPIAYELKDSGASTPEATLNPGHSAQLHTAVVDQSSL
NLRLLNYLAQDWSSKYSLRSEQEEITFIVFQSLREPEEDDGEGSERKREELDIAVHVKYD
LGQTVVAIHSPYWMMNKTGRLLQYKADDIHRKHALDYDMPLLFSFKPRYFLKNNKVHLMI
SDSELSDAFSLDTVGSHGDVKCKGRYKDYLVGVKIDASSFSLTRIVTFVPFYMLVNRTKH
TVYICEVGQENWTEAQPEQSAIPFWPENDTKLLKIKVQGCLSPPRIIDFTRPENCLLLHL
DNSVGGIIVDVNLSEHSATIRFSEYHDGAAPFLIINHTKDQTLQFHQSARTETSWVADEL
LDLSFSVEEDSSQKEVEQEELDPGRAMHYTWAEPTGSRELCWKCGSYSGKLKSEEDLCED
MNNERKLFVISFYEGLQRVVLFTEEHRIYKLLCESEKAQLAEQEIILSLQNMGVSLVNNT
SSQEVSFIGITSSDVVWELKPKKKSRWKTLSTKEVEMLESSFKEYTESGPIDNAIVDLEN
NYQVSFTPNGMDMRMLQPCDAPLRRHFLPGVKVEYSVSPRQSSYRIQIHRIQIQNQLPGA
IFPYVFYPVKLPKSITMDAEPKPLTDISIVTRTAGHSDISRIKYFKVLIQEMDLKLDLGF
LYAILDLFTPENASIMSSEQEVELFENDIENMKTELNSVSAADTSPISLYEYFHISPIKL
HLSFSLSSGGEDGLKEKRDTELIPVQSLNLLLKSIGATLTDAQDVVFKLAFFELTFQFCT
TQQLQWAVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPE
EFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEDYQQKRRETMNKQPSGL
REGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDM
ASSTFQGIKRAAETSQDIQSLRPPRFIHEDRVIRPYKEREGIGSQMLQKIENGRFAKYRY
FAHAKVNDSDFLMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKEPLIVEDRRLRIEAKER
VKSVFHAKEFGKIINFRTPEIAKWVLTKLEDAREFTQNLTEK
NT seq
9849 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcctggttgtagacgtcctcaacagatttttaggggactacgttgtc
aaccttgacagctcacagcttaagctcggcatatggggaggtgatgctattcttacaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtgagagctgga
cacataggacgactggagctaaagattccctggaagaacttgtacacccagtcagtggag
gctacactcgatggtgtctatctgctcatagtccccacagcaagtataaaatatgatgca
gaaaaggaggagaagcagctgcaggaggctcgccagagggagctacagcggatagaggag
acaaagctgaaggctgcagagcaagaagaccccaagctagagaagcaggacacctttgtg
gaaaagcttgtcactcaggtcatcaaaaatgtgcaagtcaagatctctaacatccatgtc
cgctatgaagatgatgtcactaatccaaactgtcctttgtcatttggagtgtcacttaaa
aacctcagccttcagacgtctgataaaaactggaatcccagccttttggatgagaacgca
aagctctttttcaagctggttcagttagacagcttgtttgcctactggagcgtcaactca
gtactcttctccaatcacaatgcagaggaagctttgcgatgtctcaagaatagcatggaa
atcgacagctcttatcctgtcgaccatgatttcatttttcgtcccatctcagcggctgct
aaacttcgcatgaatcctcggtcagatgtggacttctcttctcctaaagtggacttgatg
gtcaatctcagtgaagtggcgattgaacttaacagaccccagtacattagtatcctggag
ctgctgggctcagtggatatgatgtcacggaacctgccgtacaggaagtacagacctgtt
gtccaggtccacaagaatgcccgtgtatggtggaggtatgtcatcacaagtatcctggaa
gtggatgtaaagcctcgtctccacatgtggtcatggcaacacattcgtcgacacaggatc
gtggtgaaacgctaccgggagctctacaagaccaagatcaccagcaagaaacccagcgag
gagttactcaagcaactagaggagccggaaaagacattggatatttttaacatcacgttg
gctagacagcaggctgaggtggaggcgagcaaggcaggcctgcgtatttaccgtccaggg
atgaagatggaagaagaagagtctcagggttggttaagctgggtgtggaactggggagga
gagcctgatacacaagaaaaagaggtcaagactggaggatcaggttttgatgagctgtta
acctctgctgagaaagccaaactttacactgccattggatacagtgagactgctgtcaat
tccaatctgccaaaggactttgaggacatgaaggtcaacttccacatggagaagctgtcc
gtatccatcaaagacaacaaggacaaaaatgagatcatcacactgactgtgggagagctc
atgtccaccctcacacagagacctggagcacaagccatcaaaatcacagccaagcttagt
ttgtttgaggtcacaggtctggccgataagcggcctgcaccgaccctcctgtcatcaagg
aaggcggctacaggaacagggaccccgctgcttagtattctatttgagaccaacccaatg
gacgacagtgctaatcagcgtcttcatgtggaatcacagccgctagaaataatctatgat
gctattacagtgaatggcatgtcagcattcttcatgcctcctgatgacctgcagctagat
gagctcaccaatgcgaccctgatgaaactggagcagtttcgagaccgcacagcaactggt
ctaatgtatgtgatcgagacccagaaagttcttgacctgaaggtgaacttgatggcttct
tacgtcatcattccacagaccggtttctacaatgcaactcagaacatcctgctgctggat
cttggacatttcaagatgtccagtcagagcaagaagcatctacctcagctgtcggcgggc
tccagcaacattgaagacatcatgtccagagcctacgacagctttgacgttcagcttagc
agcctgcagttcctttatagcaaaccagatggtgactggaaaatggcccgtaagcagaaa
cagtcaccactccacatcctggagccagtagatcttaaagtggtgttcagtcgggcaatg
gttgtcaaagactcacgtatggcaaagtataagatctctggagagcttcctctgctttct
cttcgtatctctgatgataaactccgaagcgttctggagctggtagagagcatcccttta
ccagagagcaaaccacgcagtgctggtccatcctcaactcaaaagtcaaagcagtcgttc
accccccagctcactcccaggagacctctgaacttagccgaccagcgctcctctctcatc
ttcgagtcatgtgagaccatcagcatcacttcattggggtcagaagaagatttgttctac
gatgctcctagctctccactcggtgataaaacattcttcccagacaatcccatgcccctg
cgctacgcagacttgcacaaaagaaaaagtctgatcaaggaagacactcagaagaacatg
actgacttcgttatgacatttgaaatcagtgagttttctgttcagttgtgccgtctgtct
ggggatcaggaggtcacagtgctacacttggacatagagggtctgggcacggaactgaaa
ctgcgcacctttgacatgacatcgaacacctaccttaaagagatctgtctcaagtgtcct
gaatacatggattctgaagagaagcaggttcagctgatcacaactctagacaacacagag
gttgacctgctaaccctggagtacattaaagcggataagaatggaccagagttcaagtct
caacacaacaatacagagcagctcatcaaggtgaccttctcatccttggacgttcatctc
catacggaggctcttctaaccaccatcaacttcctcaacaacctcctgcctccatcccct
aagaaggagggagggcaggaggagctccccaccatccctgaggaggaagaggcagagggg
gagagggagggggagaaaaaggaggaaaatactgtagccaagaaaaaaacttcaaagagt
tcaaagtttgcagacattgtgaatctccacatcagagctgatctccgctgtctgaaggtt
ttcattcgaggagagaaagccaggatttctgagatcagcattgaaggtctggtttctgag
gttctgatgagaaaaaagaacatggaagttctggccaacctgaagaatattgtgatcctt
gactgtgacaatgacgccttttacaagaaggctgtgtcaatagcagacaaggaagtgttt
gccttccgcatggtgaactacacagatgcaacagaaggagatgcctatttggacatgtct
aacgttgacaccgccgtctcactgactgtgggatgcatccaggtcatctttctcaacaag
tttgtctcctccatactggcatttatcaataacttccaggaggctaaagatgccctggct
gaggtgacagtccaggctgcagaaaaggcagcgtcaggtgtgaaagagctggcagagcgc
agcacacggatcgctctgaacgtccacttcaatgcgcctatcatcttcctccctcagtca
tccacttcttccaatgtcattgtggctgatctcggcttcctctctgttaagaacagtttt
gtcaagcagccctttaaagatgatgcaaagatcccacctgttgtggatagaatgacagtg
agactgactgacctcaagatgtacagaaccacatacataaatgaaggatttcagggagag
acccagctgttgatgccagtcagccttgacttggaaatccagagaaatctttcatccaac
tggtaccacagcatacctgacatagagatcactgctcatcttaagcccatgagtctgatc
ctcagccaggatgatatgacagtggtcctgaggactctgagtgaaaacctgtcggagaaa
tctgatgttgtcccccttccagctcctccaccaaccacagacccctcctctgactgtgtg
tccaacaaagaatcccagggctctgggaccactggacccgccagcagtaacacagtggtg
acagcggctgttgtggaaacccagaagaacagtaaactaaagagcacgctcaaattagac
ttcaagttcgactccatgacacttgtcctgtacagcccaaatggaaatgagatacagcag
ttggactcacatgatgagcagctgaaactggcagagtttactctgggaaccatctctacc
tccatccacatgttctctgacagctccatgaaagcttcagtacgactggcaacctgtcta
ctagatgacaagagacccaaaatcaagatggtcaccccgaggatgatggaactgtgtcct
ggtgcagaacagaacatgatggtggaggtgaactaccgtcagggccgtgatggcaccact
ttggacacagtggtgcaggatgtgtacctgtgtgccagcatggagttcctgctcactgtg
gcagatatctttctcaaggccacccaacagggcttcgctcaagttccacaacccaagaac
agtactggatcaggagaaaagaaaaacattaactcctctatcacatctaaagagtctact
gcaactcaggccgttgtgtcaaagacagagatgaatgtctgcgtgcgaaatccagagatt
gttttcgtggctgacctgacgcgtgccgacgccccagccctggtgatgaccacacagtgt
gaactagtaatgaaaagtgatgcagagggttcacagatgactgctgttatcaaggacctc
aaggtagtggcgtgtccgttcctgagagagaagagaaaaaacaatgtgaccacagttcta
cagccgtgtcaggtgttcttccagagtactcagtcctcaacctcccctcaggctatggag
gtgtccatcaatgctctcacactgaaggtatctccaatcatcatcaacacagtcatcacc
atccagtctgcattgactcccacagcagaaactccagaggaactggaaagtcccgtcccc
gtggacatgtgggagaaacggggctggaaggaactcaaactctggttcctagaggaggag
ggggatgaagacataaagtcactggtcccattgataccacagggagagtcattacaggtg
accatcaaatcaatctgtctgactctggaggctggagtgggacaccgaacagtccccatg
cttctggctaagtcctccttccatggagatgtcacaaactggtctacactcattaactta
cacagcgaactcaacttagaggtacactattacaatgagatgatgggagtgtgggaacca
ctgctggagcccttagaggatgagacaagagatggtttcagaccctggacattaaaactg
aagatgaagaagaagccagtgaagcacacaagttgggcagatgaagttgattacaatatc
ccagactacaagactgtcattgccatcagcagtaaggaccagctcaacatcacactctcc
aaatgtggactggccatgctgagtaatctgggcacggcatttgctgaggctgccaaacag
acagctgagtgctttcagaaggatgaagctccttttgtggtgaaaaaccgcctgggcctg
ccagtgtttgtctgccacagtgagatgtttcgtcccattggccagcagagcaccaaccgc
acagtggagctgcaagacggggaaaccctcgggatggactattcaaccacaacagactcc
gaccagttctccgcaatgacctccttgagtggaaaagacttctacatacagcctactccg
gtgggccatacctcaaccagtgcgatccccctgatcaaggttggcaggggaatgtacagt
gtaatgcacagagagtctggagtcactcgcttcctggtctgtcagatttactctgtggag
ggcagcaagtacatcaagatccgctctcctttccagatcatcaatcatttctcaatccca
ttcaaagtttttgaggggtcgacatgtttgggtacagctctccctaccgaggagttttgt
gtgcctctggactcatacaggtctgagctgagcattcagccaataacagaggaagacgct
gacaatcagggtgtgcagtttgattgctcagagggctttagttacgaagatgtcaacaat
ctgcagcctgactcacgcctccagcagacctgccgtcgccgtggagaactcagtggtgtg
ctgatggtcaacattgtgccagttacggacactgtgacgttcaaacaaactggggttgtg
ggggaacactttgatgtgccctttgtgcttcacctgtggcctcccatcctgctgcgcaat
ctgttgccttatcccattgcctacgaactaaaggacagtggagcctctacccctgaagcc
actctgaacccaggccactctgcccagcttcacactgcagttgtcgaccagtcaagtctc
aatctccgcctacttaattacttggctcaggattggtcctctaaatacagtctccgtagt
gagcaggaggagatcaccttcatcgtgttccagtctctccgagagcccgaggaggatgat
ggtgaagggtcagagagaaagagggaagagttggatatagcagtgcatgttaaatatgac
ctaggacagacagtggttgctatccattcaccatattggatgatgaataagacgggcagg
ttgctgcagtacaaggctgatgatatccaccgcaaacacgcactggactacgacatgccg
ctgcttttctcctttaaacctcgttacttcttgaaaaacaataaggtccatctaatgatc
tcagacagcgagctgtcagatgcattttccctggacacagttggtagccatggagatgtg
aaatgtaaaggccgatacaaagattacctggttggtgtaaagattgatgcgagcagtttc
agtctgacacgcatcgtgacctttgtgccgttttacatgctggtcaacagaaccaagcac
actgtctacatctgtgaggtggggcaggaaaactggaccgaggctcaaccagaacagtca
gccatacctttctggcctgagaacgacaccaagctgctcaaaatcaaagtacagggttgt
ttatcgcctcctcggattattgacttcacacgaccagagaactgcttattgctgcacctg
gataactctgtgggcgggatcattgtcgatgtgaacctatcagagcactctgccacaatc
agattctctgagtaccatgacggagcggctccctttctcatcatcaaccacaccaaagac
cagactctgcaattccatcagagcgcccggacagaaacctcgtgggtggctgatgagctg
ctcgatctctccttctcagtggaggaggacagctctcagaaggaagtggagcaggaggag
ttggatcctgggagagccatgcattacacctgggctgaacccactgggtcaagagagctt
tgctggaagtgtggaagttacagtgggaagctgaagagtgaggaggacctgtgtgaggat
atgaacaatgagaggaagctgtttgtgatctccttttatgaaggtctccagcgtgttgtg
ctgtttactgaggagcatcgtatctacaaactgttgtgtgagagtgagaaggcacagctg
gctgaacaggaaattatcctgtccctacagaacatgggcgtgtctctggtcaacaacact
agcagccaggaggtctccttcatcgggatcacaagctcggatgtggtgtgggaattaaag
cctaagaagaagagtcggtggaagactctgagcactaaagaagttgagatgctggagagc
agcttcaaagagtacaccgaatccggacccattgacaacgccatcgtcgaccttgaaaac
aactaccaggtgagctttactcccaacggcatggatatgcggatgctgcagccatgtgat
gctccactcagaaggcacttcctgcctggggtgaaagtggagtacagtgtctcaccacga
cagagttcctaccgcatccaaatccaccgcatacagatccagaatcagctgccaggagcc
atctttccctacgttttttaccctgtgaaactgccaaagtcgatcaccatggatgcagaa
cccaaacctctaactgatatcagcatcgttaccaggacagcaggacactcggatatctct
cgcatcaaatacttcaaggtgttgattcaagaaatggatttgaagcttgatctgggcttt
ctttatgccatcctggacctgttcacccctgagaacgccagcatcatgagctcagagcag
gaggtggaactgtttgagaatgacatcgagaatatgaagacagaactgaacagcgtctct
gctgcggacacttctcctatcagcctctatgagtacttccacatttcccccatcaagctg
cacctgagtttctctctgagttcaggaggggaagacggcttgaaggagaagcgagataca
gaactcatccccgtccagtccctaaacctgttgctgaagagtattggagccacactcact
gatgcacaggacgtcgtcttcaagctggccttctttgagttgaccttccagttttgtacc
actcagcagcttcaatgggcggtcatcagacattattctaaacaggctattaaacagatg
tatgtgctggtgctgggcctggatgtacttggaaatccttttgggctgatcagaggactg
tctgagggggtggaggccttcttctatgagccctatcagggagccatccaggggccggag
gagtttgtcgaaggaatggctcttggggtgaaggctctggtggggggagccgtagggggg
atagcaggtgcagcctccaggatcacaggtgccatggcaaagggtgttgctgccataacg
atggacgaggactaccagcagaagagacgagagactatgaacaaacaacccagcggcctg
agagaggggctgaccaggggcggaaaaggattagtgtccggatttgtcagtggtatcaca
gggattgtgaccaaacctatcaaaggagcacaaaaggagggtgcggcaggcttctttaaa
ggtgtcggcaaaggtctggttggtgctgtagccagacctacaggaggcatcattgacatg
gccagcagtaccttccaagggatcaagagagctgcagagacttcacaagatattcagtct
ctgcgtcctcctcgcttcatccacgaggacagagtcatacgaccatataaggagagggag
ggcattggcagtcagatgctgcagaaaattgagaacggacgttttgcgaagtacagatac
tttgctcatgccaaggtcaatgactccgacttcctgatgattaccaagaggggcatattt
ttcgtgaccaaaggcacatttggccagttgacctgtgagtggcagtatctgtttgaagag
ttcaccaaggagccactgattgtagaggaccgccgacttcgcatcgaggccaaggagaga
gtaaagtctgtcttccatgccaaagagtttgggaagattatcaacttcagaacccccgag
atagccaagtgggttctcaccaaactggaggacgcaagagagtttacgcaaaacctgact
gagaaatga
DBGET
integrated database retrieval system
