Scomber japonicus (chub mackerel): 128364472
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Entry
128364472 CDS
T09718
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04137
Mitophagy - animal
sjo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128364472 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128364472 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128364472 (vcp)
03009 Ribosome biogenesis [BR:
sjo03009
]
128364472 (vcp)
04131 Membrane trafficking [BR:
sjo04131
]
128364472 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sjo04147
]
128364472 (vcp)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
128364472 (vcp)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
128364472 (vcp)
Membrane trafficking [BR:
sjo04131
]
SNARE
SNARE associated proteins
Others
128364472 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
128364472 (vcp)
Exosome [BR:
sjo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128364472 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
Vps4_C
RNA_helicase
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
ABC_tran
DUF815
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
SLFN-g3_helicase
Viral_helicase1
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
128364472
NCBI-ProteinID:
XP_053180972
LinkDB
All DBs
Position
9:22762104..22770271
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGEAKNDDLATAILKQKNRPNRLIVDESINEDNSVVSLSQTKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNITWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRISILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSATGG
SGPSHGSGGTGTGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgggaggggaagcaaaaaatgatgatctagccactgcaattctgaaacagaag
aacagacccaacagactgattgtcgatgaatctatcaatgaagacaacagcgtggtctct
ctctcccagaccaagatggatgagctacagctcttccgtggagacacagtgttgatgaag
gggaagaagagacgggagactgtgtgcatcgtgctgtctgatgacacctgttctgatgaa
aaggttcgcatgaacagggtggtccgcaacaatttgagggttcgactgggcgacgttatc
agcattcagccatgtcctgatgtgaagtatggaaagaggatccatgtccttccaatagat
gacacagtagagggaattactggcaacctgtttgaggtgtacctgaagccatacttccta
gaggcttacaggccaatccgcaaaggtgatattttccttgtcagaggaggcatgcgtgct
gtggagttcaaggtggtggagaccgatccctctccctactgcattgttgctcctgatacg
gtcatccactgtgagggagagccaatcaggagagaggatgaggaagagtccctgaacgag
gtggggtatgatgacattggaggagtgaggaagcagttagctcagatcaaagagatggtg
gagctgcctctcagacaccctgcgctgttcaaggccataggagtcaagcccccacgtgga
atcttgctgtatggaccccctggaactggaaagaccttgattgccagagctgtggccaat
gaaactggagctttcttcttccttattaatggccctgagatcatgagtaagctggcagga
gagagtgagagtaacctgagaaaggcctttgaagaagcagagaaaaatgctcctgccatc
atcttcatcgatgagcttgatgcaattgctcctaagagagagaagactcatggagaggtg
gagaggcgcattgtttctcagctgctgactctaatggacggcctgaaacagagagctcat
gtcatcgtcatggctgctaccaacagacccaacagcattgacccagctctgaggagattc
gggcgttttgacagggaagtggatattggcatcccagatgccactggcagattggagatt
ctccagattcacaccaagaacatgaagctggctgatgacgttgacttagaacaggtagcc
aatgagacccatgggcacgtgggtgcagatctggctgctctctgctctgaggctgccctg
caagccatcaggaagaagatggacctgatcgatcttgaggatgagaccattgatgctgaa
gtcatgaattctcttgctgtcaccatggatgacttcaagtgggccctgagccagagtaac
ccatcagcactcagggagacagttgttgaggttcccaacattacctgggaggacattgga
ggtctggatgatgtcaagagggagctgcaggagttggtgcagtacccagtggagcaccca
gacaagttcctcaagtttggcatgaccccatccaaaggtgtgttgttctatggtccccct
ggttgtggtaagactctgctggccaaagccattgccaacgagtgccaggcaaacttcatc
tctatcaaaggacctgagctgctcaccatgtggtttggagagtctgaggccaatgtcaga
gagatctttgacaaggctcgacaggcagccccatgcgttctgttctttgatgagctggac
tccatagccaaggcccgtggcggcaacgtgggagatggcggtggagcagctgaccgtgtc
atcaaccagatcctgactgagatggacggaatgtccagcaagaagaacgtcttcatcatc
ggagccacaaacagaccagacatcatcgaccctgccattctgagacctggccgtttggat
cagctcatctacatcccactgcctgacgagaagagcaggatcagcatcctgaaggccaac
ctccgcaagagtcccatcagcaaggatgtggacttggacttcctggctaagatgaccaac
ggcttctctggagctgatcttacagagatctgccagcgggcgtgtaagctggctatcaga
gagagcatcgagaatgagatccgcagagagagggagaggcagaccaacccatcagctatg
gaggtggaagaggatgatcctgtgccagagatcaggaaggaccactttgaagaggcgatg
cgatttgctcgtcgctccgtcagcgacaatgacattcgcaaatatgagatgtttgctcag
acactgcagcagagccgtggcttcggcagcttcaggtttccctccagcgctacaggtggc
agcggtccaagccatggctccggaggaactggcactggtcccgttttcaatgaagataac
gacgatgacctttatggataa
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