Scomber japonicus (chub mackerel): 128364533
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Entry
128364533 CDS
T09718
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128364533 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128364533 (polb)
Enzymes [BR:
sjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
128364533 (polb)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
128364533 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
128364533 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_5
HHH_2
NTP_transf_2
DUF4806
Cdd1
Motif
Other DBs
NCBI-GeneID:
128364533
NCBI-ProteinID:
XP_053181056
LinkDB
All DBs
Position
9:15304723..15310852
Genome browser
AA seq
336 aa
AA seq
DB search
MSKRKAPQESLNEGITDFLVELANYEKNVNRAIHKSNAYRKAASTISKYPTKIRNGEEAK
KLDGVGAKIAEKIDEFLQTGKLRKLEKIRTDDTSSSINFLTRVTGIGPAAARKFFEEGVK
TLDDLKKIEHKLNHHQQIGLKYFEEFEKRIPRAEMEQMETLIIGELKKVDTEYIGTICGS
YRRGAASSGDIDILLNHPDYTSQTEKQPKLLHAVVEHLESIGFVTDTLSKGDTKFMGVCQ
LQQSDEDEEEFLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIR
PLGVTGIAGEPLLVDSERDIFEYIQYKYREPKDRSQ
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaggaaagcgccgcaggaatccctaaatgagggaataacagactttcttgtc
gaactggccaactacgagaaaaatgtcaacagggcgatacacaagtccaatgcttacagg
aaagcagcttctaccatttcaaagtaccccaccaagattagaaatggtgaagaggccaag
aaactggatggtgttggagctaaaatagccgaaaagattgatgagttcctacaaactggg
aagctacggaagctggaaaagattcgaactgatgacaccagctcttcaatcaattttctc
actagagtaactggaattggccctgctgccgccaggaagttttttgaagaaggggtgaag
acattagatgatttgaaaaagatcgagcacaagctaaaccatcatcagcagatcggactc
aagtattttgaggaatttgagaaaaggattccacgagctgagatggaacagatggagact
cttattattggagagttgaagaaggtcgatacagaatatattggaacaatctgtggaagt
tacaggcgaggtgcagcatccagtggtgatattgatattttgctgaaccacccagactac
acctctcagactgagaaacaacccaagctcctccatgccgtggtcgaacatttggagtcc
attgggtttgtgactgacactctgtccaaaggagacaccaagttcatgggagtttgccaa
ctgcaacagagtgatgaagatgaggaggaattccttcacaggcgtattgatataaggtta
attcccaaggaccagtactactgcggcgtgttgtacttcacaggaagcgatatcttcaat
aagaacatgagaactcatgctttggagaagggcttcactcttaatgagtacaccatacga
ccacttggagtcactggtatagcaggggagcctctgttggtggatagcgagagagacatc
tttgagtacatccagtacaaatacagggagcccaaggaccgcagccagtga
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