Scomber japonicus (chub mackerel): 128364560
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Entry
128364560 CDS
T09718
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03030
DNA replication
sjo03410
Base excision repair
sjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128364560 (pole)
03410 Base excision repair
128364560 (pole)
03420 Nucleotide excision repair
128364560 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjo03032
]
128364560 (pole)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128364560 (pole)
Enzymes [BR:
sjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
128364560 (pole)
DNA replication proteins [BR:
sjo03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
128364560 (pole)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
128364560 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
128364560
NCBI-ProteinID:
XP_053181087
LinkDB
All DBs
Position
9:22465097..22479841
Genome browser
AA seq
2283 aa
AA seq
DB search
MVLQNSGRYRSDRGQSGGDQENQDDGSSMSALKRLERSQFTDEMDSRFSFDRMKEPGEKT
GWLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPYKPYFYIATKKNCEREVISYL
SKKFQGKVSKLETLPKEDLDLPNHLVGLKRNYIKLSFNTVDDLIKVKREISPAVRKNRER
EQSNDAYTSMLSSALSGGNVATADEDAMLKSISDQLDNIVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRGSTFPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAESDQIMMMSYM
IDGQGFLITNREIVSEDIEDFEFTPKPEYEGPFTIFNEDDEAALIQRWFDHIHETKPNIF
VTYNGDFFDWPFVETRAALHGLSMYKEIGFQKDSQGEYKSSQAIHMDCYRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQVFNKMTDDGHVMDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLFQRVERTMRHAIEEEENIPLEQVTNFNEV
CDEIKQKLTSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GAMCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGPPRAFHTLNREEQAKHE
KKRLADYCKRAYKKTHVTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQDSGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNI
LVKEGFTNDQYHELVDPASLTYNTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVSKVADYWLDVLYS
KAANMPDAELFELISENRSMSKKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHELDIRTILDWNYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVGFTL
AGQTADIEDFGMPARPLQPAILISTKRKRVSQGEDSQVESQDVELTQSWREILGPPPPMG
KTKEERLVWLRYHKKKWELQLRQRKERKKRRRLLDGEAQPVGGGVIRDGPTSGLGSFLRR
TARSVLDMPWQIVQIAETSHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGATY
KKVNRMLPRSNMVYYLYEYCVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQL
GCVCMVNKHVVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHMYLYHHSQGHKALFG
LFIPSQRKASIFVLDTVRSNQMPNLSNLYTAERTALLEKMTEELLPPEKHNFEVRAENDV
KAIYRALQRILLTYKEERRGPTLIAVQSNWELRRLAAGMPVLEEFPVVPVHVIDEISYNV
LDWQRHGARRMVRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRKHN
HLLWLSPTARPDLGGKEADDSRLVMESDDRCSVEINAQGCYSTVCVELDVQSLAVNTILQ
SQHVNDMEGGSSLGVSFDVIQQASLEDMMSGNQGASSLASYDETALCSNTFRILKSMVVG
WVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVAEFKRLGS
TVVYGNFNRIILCTKKRRIDDAIGYVEYITNSIHSREIFHSLSISFSRCWEFLLWMDLAN
NGGVKGRLPSSILYGEKKKNREEGDEDASEDEDEDEANVEEDDGETDEVEELIESNWNIM
QYLPQTASCQNYFLMIVSAYIAAVYHSMKEELRRNTPGATPIKRRGGSQPSQQAVGDLSA
LPGMISFSQEYVSNELTQNFFNITQKIQKKVTGTRSTQPSEMFPILPGSHLVLNNPALEF
IKYVCQVLSLDANIVNQVNKLKRDLLRLVGVGEFSEDAQFHDPCNSYILPEVICNHCNFC
RDLDLCKDPSVAQDGSVLPQWFCSNCQAQYETESVEMALVEALQKKLMSYTLQDLVCTKC
KGVKEANMSLYCKCAGDFDLTFPAKSFAEQITVFRNIASHYNMSFLEETIDWLLAMSPQL
STQ
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggttttacaaaacagtggaaggtacagatctgaccggggacaaagtggaggagatcag
gaaaaccaggacgatggctcctccatgtcggccctcaagaggctggagcgcagccagttc
accgacgaaatggactcacgcttcagcttcgacaggatgaaggaaccgggggagaaaacc
ggctggctgatcaacatgcatcctactgagatcctggatgaagacaaaaggatgattagt
gctgtggactattatttcattcaggaggatggcagcaggtttaaggtggctctcccatac
aagccatatttttatattgccactaaaaagaactgtgagagagaagttatttcatatttg
tcaaagaagttccaaggaaaggtttcaaagcttgaaaccctcccgaaagaagacctggac
ctgccaaaccacctggtcggactgaagagaaactacattaagctgtcattcaacaccgtg
gatgacctcatcaaagtcaagcgtgagatttccccggcagtgcgtaagaacagagagagg
gaacagtccaatgatgcctacacttcaatgttatcaagtgccttatcaggtggcaacgta
gcgacagcagatgaagatgcaatgttaaagagtatttccgaccagttagacaacatagtg
gacatgagagagtatgacgtgccctaccatgtgcgcctgtccatcgacctgaagatccac
gtggctcactggtacaatgtccgatacagaggcagtaccttcccaccagagattgttcgg
agagatgatcttgtggagcgcccagaccctgttgttttggcttttgacattgagaccacc
aaacttccattgaaattcccagatgcagagagcgaccagatcatgatgatgtcctacatg
atcgatggacaggggtttctaattacaaatagagaaatcgtctctgaggacattgaggat
tttgagttcactcccaaacctgaatatgaagggcctttcactattttcaatgaagatgat
gaggcggctcttattcagaggtggtttgatcacattcacgaaacaaagcccaacatcttt
gtaacctacaacggagacttctttgattggccttttgttgagacgcgagctgccctccat
ggacttagcatgtacaaggagattggtttccagaaggatagccagggagagtacaagtcc
agtcaggccatccacatggattgttatagatgggtaaagagagacagttacctaccagtg
gggagtcataatctaaaggcagcagctaaggctaaactgggctacgaccctgtagagctg
gacccagaggagatgtgccgcatggcaacagaggaaccacagactttagccacctactct
gtgtcagatgctgtggccacatattacctctacatgaaatacgttcaccccttcatcttt
gctctgtgcaccatcatccctatggagcctgacgaggtgctgcgtaagggttctgggact
ctgtgtgaagctttgctcatggtgcaggccttccatgccaacatcatcttccccaacaag
caggagcaggtcttcaacaagatgacagacgacggccatgtcatggactctgagacctac
gtgggcggccatgtggaggcgctggagtccggcgtgttccgcagtgacatcccctgccgt
ttcaaaatgaacccagctgcatttgacttcctgtttcaaagagttgagagaacaatgcgt
cacgccattgaggaagaggagaatatccccttggagcaagtcaccaactttaatgaggtc
tgcgatgagatcaaacagaagctgacttctctgaaggaggtcccaaacaggatcgaatgc
cccctcatttaccatctggatgtcggggcgatgtaccccaatatcatcctaacaaaccgc
ctgcagccatctgccatggtagacgaagccacctgtgcagcctgtgatttcaacaagcct
ggtgccatgtgtcagaggaggatggcctggcagtggagaggagaaatcatgcctgccagc
cgcagcgagttccaccgcatccaacagcaactcgaatccgagaagtttccgccctttttc
cccaacggtccacctcgggccttccacaccctcaacagggaggagcaggccaagcatgag
aaaaagcgtttggcagattattgtaaaagagcctataagaagactcacgtcaccagactg
gaggagagagtcactaccatctgccaaagagaaaactccttctatgttgacactgtgaga
gctttcagagatcggcgttatgaattcaaaggattgcacaaggtgtggaagaagaaactg
tcagcggctcaggacagtggagatgctgcagaggtgaagcgctgcaagaacatggagatc
ctgtatgagtctcttcagctggctcacaagtgtattctcaactctttctatggctacgtc
atgaggaaaggggcgcgctggtactccatggagatggctggcattgtgtgctacactgga
gccaacattatcactcaggccagagagctcatcgaacagatagggaggccccttgagttg
gacactgatggtatctggtgtgtcctcccaaacaccttccccgagaactttgtcgtgaaa
accagtaacgaaaaaaagcccaaagtgaccatctcctacccaggtgccatgctgaacatc
ttggtgaaggagggattcaccaacgatcagtaccatgagctggtcgaccctgcgtcactc
acttacaacaccaggtcagagaacagcatcttctttgaggtggatggaccatacctggcc
atgattctgccagcatctaaagaagaagggaagaagctgaagaaaaggtacgctgtgttt
aatgaagatggctctctggctgagttgaagggttttgaagtgaagagaagaggagagctc
cagctcattaagatttttcagtcatctgtgtttgaggctttcctcaaaggtaccactctg
gaggaggtctatgcctctgtgtccaaagtagccgactactggctggatgtgctatacagc
aaggctgccaacatgccagatgcagagctgtttgagctgatttcagagaatcgctcaatg
tccaaaaagctggaggattacggcgagcagaagtccacttccatcagcacagctaagaga
ctggcagagttcctgggagaccaaatggtgaaagacgctggccttagctgtcgctatgtc
atctcccgaaaacctgagggttctcctgtcacagagagagccatccctctggcaatcttc
caggcagagcccagtgtgaagaaacatttccttcgtaagtggttgaagatgcccagcctg
cacgaattggacatccgtaccatcctggattggaattattacatagagaggttgggtagt
gccatccagaaaatcatcaccatccctgcagctcttcaacaggtaaagaatccagtaccc
agagtgaggcatcccgactggcttcataagaaactcctggagaaaaatgacatctacaag
caaaagaaaatcagtgagctcttcaccagtgagggcaagagacaggtagggtttacttta
gcaggtcagactgctgacatcgaggactttgggatgccagctagacctctgcagccggcc
atcctcatcagcaccaagaggaagcgagtttctcagggagaggacagccaggtggagtct
caggacgtggagctcacccagtcctggagggagatcctgggaccaccccctcccatggga
aaaacaaaggaggagcgactggtgtggctgcgttaccacaagaaaaagtgggagctgcaa
ctcaggcagaggaaggagaggaagaagaggaggaggctgttggacggagaagcccaacct
gtaggtggaggagtaatcagagatggcccgacctctggcctgggaagcttcctccgcaga
acagctcgcagcgtcctggacatgccttggcaaattgtgcagattgcagaaactagtcac
cccggtttgtacaagttgtgggctgtgatcggaaatgaccttcactgcatgaagctcaac
atccctcgtgtcttctacgtcaatcagaaagtcccaaaacaggaggagggagccacatac
aaaaaggtgaaccgcatgctgcctcgctccaacatggtgtactatctgtatgaatactgt
gtaccagaggacatgtaccaggagcacatcaatgagatcaatgctgacctctctgcacca
gacatcgaaggagtttatgaaacacaggtccctttgctgtttcgtgcactggtgcagctt
ggatgtgtgtgtatggtcaataagcatgtcgtgagggacctagccggcagggaggctgac
acctttgacctggagcatctagaaatgagatctctggcccagttcagctacctggagcct
gggagtgttcgccacatgtacctgtaccatcacagccagggtcacaaggctttgtttggc
cttttcatcccctcacagcgtaaagccagcatctttgtcttggacacagttcgaagcaac
cagatgcccaacctgagtaacctctacacagctgagcgtactgctctcctggagaagatg
acagaggagctgctgcctccagagaaacacaactttgaggtccgggctgaaaacgacgtg
aaggctatctaccgcgcacttcaacgtatactgctaacctataaggaggagcgtcgtggg
ccaaccctcatcgcagtgcagtctaactgggagttgcggcgattggcagcggggatgcca
gtgcttgaggagttccctgtcgttccagtgcacgtgatcgatgaaatcagttataatgtg
ctggactggcaacgccatggtgcccgacgcatggtccgccactatctcaacctggacagc
tgcctgtcacaggctttcgacatggccaggtattaccacttacctgtgggtaacctgcct
caggatgtgtccatctttggctcagacttgttcctggcaagacatctgcggaaacacaac
cacctgctgtggctttcacccacagccaggccagacctcgggggaaaggaggctgatgac
agccgtctggtcatggaaagtgatgacaggtgctctgtggaaatcaatgctcaaggatgc
tattctacagtgtgtgtggagctggacgtgcagagcctggcggtgaacaccatcctccag
tcacagcatgtcaatgacatggagggtggatccagtctgggggtcagttttgacgtgatc
cagcaggcctctttggaggacatgatgtcaggaaaccaaggagccagctctcttgccagc
tatgatgagaccgctctctgctccaacaccttcaggatcttgaagagcatggtagtgggc
tgggttagggagatcacacaataccacaatgtgtacgcagacaaccaggtgatgcacttc
taccgctggctgcgctcccccagctctctgctctatgaccctgcattgcaccgtaccctg
cacaatatgatgaagaaggtcttcctccagttggttgcagagtttaaacgtctcggctcc
actgtggtttacggaaacttcaacaggatcatcttgtgtactaaaaaacggaggatagat
gatgccattggctacgtagaatacatcaccaacagcatacactccagagaaatcttccac
tctttgtccatctccttctctcgatgctgggagtttctgctatggatggatctggccaac
aatggcggtgtgaagggcagactgccttccagcatcttgtatggagagaagaaaaaaaac
agagaggagggagacgaggacgccagcgaggatgaagatgaggatgaagccaacgttgag
gaagatgatggagagacggacgaggtggaggagctgattgaaagcaactggaacatcatg
cagtatctgcctcaaactgcctcttgtcagaactacttccttatgattgtctcagcttac
attgcagcggtataccacagcatgaaagaggagctgcgacgcaacactcctggagcaacg
cccatcaagaggcgtggaggcagccagccatcccagcaggcagtgggagacttgagtgct
cttcctggaatgatctccttctcccaggaatatgtgtccaacgagctgacgcagaacttt
ttcaacatcacacaaaaaattcagaagaaagtaacgggtacaaggagtacccaaccttca
gagatgtttcccatccttcctggttcacacctggtgcttaacaaccccgcactggagttc
atcaaatatgtctgccaggtcctgtcactagatgcaaacattgtgaaccaggtgaacaag
ctgaagagagacctcctgcgcctcgtgggtgttggagagttctcggaggatgcacagttt
catgatccctgtaattcttacatcctgccagaagtcatctgcaaccactgcaacttctgc
cgtgacctcgacctctgcaaggacccatctgtggcacaggatggatctgtcttgcctcag
tggttctgctccaactgtcaggcccagtacgagactgagtctgtggagatggctttggtg
gaagctctgcagaagaaactgatgagctacactcttcaggacctggtgtgtaccaaatgt
aaaggggtgaaggaggcaaacatgtccctctactgcaaatgtgccggagactttgacctc
accttcccagcaaagagcttcgcagagcagatcacagtgtttcggaatatagcgtcccac
tacaacatgagcttcctggaggagaccattgactggctgcttgccatgagtccacagctc
agcactcagtaa
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integrated database retrieval system
