Scomber japonicus (chub mackerel): 128364572
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Entry
128364572 CDS
T09718
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128364572 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128364572 (thoc5)
03041 Spliceosome [BR:
sjo03041
]
128364572 (thoc5)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128364572 (thoc5)
Spliceosome [BR:
sjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128364572 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF2542
Motif
Other DBs
NCBI-GeneID:
128364572
NCBI-ProteinID:
XP_053181104
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All DBs
Position
9:22736603..22743564
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AA seq
684 aa
AA seq
DB search
MSSDALKKRKSKVLRSEGGTPEIKRGRGDGDQQDVRVYSEEVELDGRDPEQDYLQYKESC
ESLASLMGEIQELKANGAKEGCAEVERRRMQGCIHFMNLKKLNRLAHMRLKRGRDQTHEA
KQRVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSEEEFYQEAPQEISRPHLT
KNDPHQLTLARLDWELEQRKRLAEKYKESQATKEKIQKSIEVKKEHLRSLQPGLNAIMQA
SLPVQDYLSMPFEQTQKQTEIARHLPPPLYVLFVQANAYSQACDKNLTVSISGDVDEAKA
LSKPPEDSQDDESDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGS
VLHLFFYYLMNLNIMTVKTKVSTSIDLSTAISAGDLLKADTLLSCLFTSDQGRETPNPAN
RYQFDKVGIVSFADYVEELGHPYMWVQNLGGLHFPSDGSEGVRLGSSLSASHMESTIKLL
RGRVQSRLALHKQFASLEHSIIPVSSECQHFFPAKIISRLARWTTITQQEYMDMPFVRHV
TDAGLAKETDLYFMAVVERGTARLQAAVVLSPRYPEMSPLFSLSLSWKGERSGRTDDNLR
AMESEVNVFKNELQGPRPGHQLLTNQIARLCVCLDVYLETEGQDDSVEGPREFPREKMCL
RTVRGPNRLKPFKYNHPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcagacgccctgaagaagcgaaagtcgaaggtgctccgcagtgaaggaggaacc
ccagagataaagcgaggccgaggagacggagaccagcaggatgtacgtgtatacagtgag
gaggtggagcttgacggcagggatcctgagcaggactacctgcagtacaaagagtcctgt
gaaagtctggctagcctcatgggtgagatccaggaactaaaagccaacggagccaaagag
gggtgtgcggaggttgagcgaagacgcatgcagggctgcattcacttcatgaatctgaaa
aaactcaatcgtctggctcatatgcgacttaagagaggcagagaccaaacacatgaggca
aagcagagagtggatgtgctgcatcttcagttgcagaatcttctgtatgaggttatgcat
cttcagaaggagatcagcaaatgtctggagttcaagtctaagcatgaggagatagacctc
gtgagtgaggaggagttttaccaggaggcaccgcaggagatttccaggccccaccttaca
aagaatgatccccaccagctcacactggcacgactggactgggagcttgaacagaggaag
aggttggcagagaaatacaaggagtctcaagccacaaaggagaagatccagaagagtatt
gaggtgaagaaggaacatctgagaagcttacagcctggactgaatgccataatgcaggcc
tctctcccagtgcaggactacctgtccatgccttttgagcagactcagaaacagacggag
attgcccgacacctgccccctcccctctatgtcctgtttgttcaagccaatgcttacagt
caggcctgtgacaagaacttgactgtgtcaatcagcggtgatgttgatgaggccaaggcc
ctgtcaaaacctccagaagattcccaggatgatgagagtgactcagatgcagaggaggag
caagagaaaacgaagaggaggaggccgactacaggcggccagctggacgacaaaagacga
gagatgctgaaaaggcacccgctgtccctgtgcttggacctcaagtgtaaagatggtagt
gtcctccatctcttcttctactatctgatgaatctgaacattatgacggtcaagaccaag
gtctccacatccattgaccttagcacagccatcagtgcaggggacctgctgaaagcagat
actctactcagctgtctcttcaccagcgaccaaggaagagaaacacccaatccagctaac
cgctatcagttcgataaagtcgggattgtttcttttgctgattatgtggaggagttgggc
catccctacatgtgggttcagaatcttggtggactacattttccaagtgatggttcagag
ggtgtgcgtctgggcagttctctgagtgccagccacatggagagcaccattaagctgctg
aggggtcgagtgcagtcccgcttggccttgcataaacagtttgcctctttagagcacagc
atcatccctgtctccagtgagtgtcagcatttctttccagccaagatcatctcccgttta
gctcgctggaccaccatcacacagcaggagtacatggatatgccatttgtacgtcatgtg
actgatgctggtctggcaaaggagactgatctgtacttcatggctgtggtggagagaggc
acagctcgtctccaggctgcggtggtgctgagtccccgttacccagaaatgtctcctctt
ttctccctctctcttagctggaagggagagcgcagtggacgcactgacgacaaccttcga
gccatggagagcgaggtgaacgtgttcaaaaatgaactgcagggcccccgtccaggacat
cagctcctgaccaatcaaatcgcacgcctgtgtgtctgcctggatgtgtatttggagact
gagggacaggatgacagcgtggagggaccacgggagtttccccgtgaaaagatgtgcctg
cgcactgtcaggggtccaaatcgtctgaagccattcaagtacaaccatcctcagggcttc
ttcagtcatcgttaa
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