Scomber japonicus (chub mackerel): 128364682
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Entry
128364682 CDS
T09718
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128364682 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128364682 (lsm1)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128364682 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
128364682 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
128364682
NCBI-ProteinID:
XP_053181248
LinkDB
All DBs
Position
9:28269215..28273009
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AA seq
133 aa
AA seq
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MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDVDKPCDTVLQQVSIEEILEEQRLKQQAKQETEKVKMQVLKDR
GLSVPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgtaccagggacggcaagtctcatagacgacatcgacaagaaacacctggtc
ctgctccgggatggcaggacactgatcgggtacctcaggagcattgatcaattcgccaat
ttagtttttcatcagacagttgagcgcatccatgtggggaagaaatttggtgacatcccc
agaggaatattcattgtgagaggagaaaatgtggtcctacttggagagatagatgtggat
aaaccctgtgacacagtcctgcagcaagtgtccatcgaagagattttggaggagcaacgg
ttgaagcagcaagccaaacaggagacggagaaagtcaagatgcaggtcctgaaggaccga
ggcctttccgtccccaaagccgataacttagatgaatactaa
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