Scomber japonicus (chub mackerel): 128364869
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Entry
128364869 CDS
T09718
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128364869
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Meiosis-specific proteins
Others
128364869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
ACT_5
Motif
Other DBs
NCBI-GeneID:
128364869
NCBI-ProteinID:
XP_053181467
LinkDB
All DBs
Position
9:12875165..12891693
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AA seq
1534 aa
AA seq
DB search
MDEFINFDSEVIHELYKHMEVTEAVLCENDTEMFPAVRYKALDYVFETTTSLKVMMNLLA
LPAPYLTGTSDLYPHSGSLPEVTYRTPWIRGKIISTCRLFVSGSVLDDLGRKKQVNSPER
FNVTLNHVKDKVEVIPSSNPDSLDDPDQDECIRLLKDSKINDPCQESFFKLSADQTYHES
ENKSKDLHLPEEMMVVNFLPQFKRHLPTLKTKLSRLRTLPVADPLLSSTGEAISEETIFR
HCAPYETPPDVFPSDVQMCANIYEEFVKDSQMKEESLLLPDVLDDFKLTSENFTTFSSIR
GRVNVVPEQLDEQLPVLDLLHGPVSVDISQYVLPEEPSRGCKMNGGLIDTDLPVRLLLPT
EMELDVTLTSETSQTFISLSTKDLQREESSLLSRLCLVPERAQKEMETALWMAEKHPTFI
LGFLLAEPQIYEPADFQPLSGALKLLKDPSFVSVGDQLQPQMESGVLQVCTSSCCEFTES
LSSERPSTEEKEEKEEKEDFTKLSLEDLEFAIRSIQISPTNETHLKSPDQKKSEAVAASL
QKETITDSSQHSLPMHAVNTNKEVKPAALMFPKPETLTKTKHGVTDKMFSEVVSISSARK
NDIRPTGRDVSESQSQLSNVPSRPNIRDNHRGILVSKRPREKDLDPLSTFMMLRSQQRSP
QSCVNTAAPKVDKQPPPSELRPPADQIQKPDRTPNLMNAAVSGNATREQKAAGQPTGRLI
SPLVTQDRKESRVLQVQATASQQRAYCELLAFAEPRLSSAKQLWLNFPAWGDFSSLTSDQ
THFLLKQQERALCRTTAQSAELIRDQELLFNQVALIHVLVTLKDLLLKCDLGTAVEYLTK
AAEACAEQSLKQLVKRLQIILYLSHRDQESPHKLLELHQLLAAWLQGRKGQNNRDKILVI
ISVDSDDSRSTIIKDLNQLTDVTAVCPMEDKNKLNGANVVSSVRDSVCALVYEKHIGPDF
PWNCFSLVVEYDHPGQSPWAAICRERSISHLTFNTILHDEKKKASWCLEDNVPYVLFVTE
GLLNCPVLLQTLESVFNITVLERSHCPSLQMLGGTHHYSVITVDERTAIVVQEQDELCAE
RASEGVVMRLTALSLQYSCCWIILHCPDNREGGFSGEAFSNLVLIYSSLVLFGMKSEDLD
VKVLIVSEVLEIAKWISQICFLSLMSSDRDPLSYLDRDWLAVTPSQVTPTSQNQSRRRLT
EEQSLLQFPCINPLVCQLMLKRAASFQWLLRASLPQLKELLPEVPHKVLKLFSDTTSLYT
LTAHPDRPDSQTVINETNHQTSPPNSPWTKKPDSDPHPQLPINLDAEPEPEPFSNNHSTN
FLFGAESADPDSTEQEGNTDFRLDLGSSFGSQDLQRSWTSSDLWKEDDRSRDEAAFCGWR
GRSGAVGRVVGRVDDEWANRAPPNLNEYTNYLQSTPDSPLKLDSTFSYSSVLQQPANTQT
STFSAGHGDLGLSLPAEVTLWDRGQSGQDFASNLGGMSRISATYGSKCWIGHERKRNGEA
AGLVGTAMSPPKMGRLSYEKVPGRSDGQTRLKLF
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtttattaacttcgactctgaggtcatacatgagctttacaagcacatggag
gtcacagaagctgttttgtgtgaaaatgatactgaaatgtttcctgctgtcagatataaa
gctctggattatgtgtttgagaccaccaccagtctgaaagtaatgatgaacctgttggcg
ctgccagcaccttacctcacgggtaccagtgacctgtatcctcacagcggcagcctgcct
gaggtcacctacaggacgccgtggatcagaggaaagatcatctccacctgcagactcttc
gtcagcggctctgtactcgacgacttgggacggaaaaaacaagttaattcaccagagaga
tttaatgtcactctgaatcacgtgaaagacaaggtggaggtgattcccagctctaatcct
gactcactggacgatcccgaccaggatgagtgtattcgtcttttaaaagactcaaagatc
aatgatccgtgtcaggaatcctttttcaagttgtcggctgatcagacgtatcatgaaagt
gaaaataagagcaaagatctccacctcccagaagagatgatggttgtcaatttcctgcca
caatttaagagacatctgcccacgctgaaaaccaaactgtccagactgaggacgcttcct
gtggccgaccctctgctgagctcgacaggtgaagccatctctgaggaaacaatattcaga
cactgtgcaccctatgagacgcctcctgatgttttccccagtgacgttcaaatgtgtgca
aacatttacgaggaatttgttaaagactcacaaatgaaggaagagtctctgctgttacct
gatgttctggacgatttcaaactgacctcagaaaacttcaccactttttcaagcatacgt
ggtcgtgtgaatgttgttcctgaacagctggatgagcaacttcctgtcctggatttgctt
catggaccagtatctgtggacatttcccagtatgttttaccagaggagcccagcagagga
tgcaagatgaacggaggcctgatcgacacagatttaccagtacgtttgttgcttccaact
gaaatggagctggacgtgactttgacttctgagaccagtcagactttcatctctctgtcg
actaaagatctacagagggaagagtcgtccctgctcagcagactatgtttggtgccagag
agagctcaaaaggagatggagacggcactttggatggcagagaagcacccaaccttcatt
ctgggctttctgttggcagaacctcaaatatacgaacctgctgatttccagcctctgtct
ggagccttgaaattattaaaggatccaagttttgtcagtgttggtgaccaactgcagccc
cagatggagtcaggagtcctgcaggtgtgtacaagcagctgctgtgagttcacagagagc
ctgagctccgagcgtccgtctaccgaggagaaggaggagaaggaggagaaggaagatttc
accaaactgtcacttgaagatttggagttcgccatcagatcgatccagataagtcccaca
aacgaaactcacctgaagtcacctgatcagaagaaatctgaagctgttgcagcctctctc
caaaaagaaaccatcactgattcatctcagcacagcctcccgatgcacgctgtcaacaca
aacaaagaagtcaaacctgcagcgttaatgtttccaaaacctgaaaccctcacaaagacc
aaacatggcgtcacagacaagatgttttcagaggttgtatccatctcttctgctcgtaag
aacgacatcaggcccacaggtagagacgtctccgagagccaatcacagctgagtaacgtc
ccctccagaccgaacatcagagacaatcacagaggcatcctggtctccaaacgtccacga
gagaaggacctggaccctctgtccacattcatgatgctgaggtcccagcagaggtcccct
cagagctgcgttaacactgcagcaccaaaggtggacaaacaacctccaccgtcggagctg
cggcctcctgcagaccagattcaaaaaccagacaggacaccaaacttgatgaatgctgct
gtgtcaggaaacgctaccagagagcagaaagcagccggtcagccgacgggtcgactcatc
agtccgctcgtcactcaggacagaaaggagagcagagtcctgcaggtccaagctaccgct
agccagcagcgtgcgtactgtgagctgctggccttcgctgagccccgtctgtcctctgcc
aaacagctgtggctcaacttcccagcgtggggagacttcagcagcctgacctcggaccaa
acacacttcctgcttaaacagcaggagagggcgctctgcaggaccaccgctcagagcgca
gagctcatcagagatcaggaactacttttcaaccaggtcgctctgatccacgtgctggtg
acactgaaggacctgctgctgaagtgtgacctcggcactgctgtggagtacctgacgaag
gcggccgaggcgtgcgcagagcagagtctgaagcagctggtgaagaggctgcagatcatc
ctgtacctcagtcacagggaccaggagtcgccccacaaactgctggagctgcatcagctg
ctggccgcatggctgcagggcaggaagggacaaaacaacagggacaaaattcttgtcata
atatcagtcgactctgacgacagcagatccacaatcatcaaagatttgaaccaactgact
gatgtaacagctgtttgtcctatggaggataagaacaaactgaatggtgccaatgtggtc
agcagcgtgcgtgacagtgtgtgtgcgctggtgtacgagaagcatataggccccgacttc
ccctggaactgtttctccctggtggtggagtacgaccatccaggccagtctccgtgggcc
gcaatctgcagagagaggagcatcagtcacctcaccttcaacaccatcctccatgacgag
aagaagaaagcctcttggtgcctggaggacaacgtgccgtacgtattgtttgtgactgag
gggctcctcaactgtccggtgctgctacagacgctggagtcagtgtttaatataactgtg
ctggagagaagtcactgtccgtccctccagatgctcggcgggactcatcactactctgtg
atcacggtggatgaaaggaccgctatcgttgttcaggagcaagatgaactgtgtgcggag
cgggcaagtgaaggagtggtgatgaggctgactgctctgtctctgcagtacagctgctgc
tggatcatcctgcactgcccagacaaccgggagggaggattttctggtgaagctttcagc
aacttggtgttgatttattcgtctctggtgcttttcggcatgaagtcggaggatcttgat
gtgaaggtgctgattgtgtcggaggtgttggaaatcgctaaatggatcagtcagatctgc
ttcctcagcctgatgtccagtgacagggatcctctcagctacctggacagagactggctg
gctgtgacgccctcacaggtgacccccacatcacaaaaccagagcaggagaaggttgacg
gaggaacagtctctgctgcagttcccgtgtattaaccctctggtttgtcagctaatgctg
aagagagcggcctccttccagtggctcctgagggcctctctgcctcagctgaaggagctg
ctccctgaggtgccacataaagtcctaaagctgttcagtgacaccacctctctgtacaca
ctgaccgcacatccagaccggcccgactctcagactgtgatcaatgaaacaaaccatcaa
accagtccacctaacagcccgtggaccaaaaaacctgactctgatccacatccacaactc
cccatcaatctggatgcagaaccagaaccagaaccattctctaacaaccacagcaccaac
ttcctgttcggagctgagagcgcagatccagactcaacagagcaggagggaaacacagat
ttcagactagatctgggttcctccttcggtagccaggacctccagaggagctggaccagc
agcgatctgtggaaggaggacgacagaagcagggacgaggcagcgttctgtggctggagg
ggcagatccggagcagtggggcgagttgttgggagagtagatgatgaatgggcgaacaga
gctccaccaaacctcaacgaatacacaaactacctacaaagcacacctgatagtccccta
aaactggactccaccttcagttacagctccgtcctgcagcagccagccaacacccaaaca
tccaccttctccgcaggccacggcgacctcgggctgagccttcccgcagaggtcacgctg
tgggatcgaggtcaaagcggccaagacttcgcctctaatctcggagggatgtcgagaatc
tcggcgacctacggctccaaatgttggatcggacacgagaggaagaggaacggagaagct
gctggattggttggcacagcgatgtcgccaccgaagatggggaggttaagttacgagaag
gtgcccggccgaagcgacggacagacgaggctgaaattattttag
DBGET
integrated database retrieval system
