Scomber japonicus (chub mackerel): 128365312
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Entry
128365312 CDS
T09718
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128365312 (gapvd1)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
128365312 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
128365312
NCBI-ProteinID:
XP_053181969
LinkDB
All DBs
Position
9:28618921..28652812
Genome browser
AA seq
1475 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNSDVLKTAERLYRAAWIAKQQRINLDRLIL
TSAEASPAECCQHAKMLEDTQFVDGYKTLGFQETIYGEFVARLRENPRLVASCLVAGERL
NQEHTQGVIYTVFTSLYGNCIMQEDESYLLQVLRYLVEFELKENDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPAKVTERLTPAQQERFGEKGSE
GYKQRVQAAVEANEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEVGE
VRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDADPR
RKSCLSKFDKSCVAAFLDVVIGGRAVETPPMSSMNLLEGLSRTAVYITHHQLLALLDFVR
SVTAGDHLREEDHMALETLLANVPQSRTVKSNSLELTPSNTPQLSPATTPANKKNRLPIG
QHLAAITSWDPTTTTLSAHIPLVTPFAAARSRSRTNIAQEGEAEASSQESLQELMPEEVL
VISLGSGPQNVPGMMSENEVLNLQMADGAQGDGHADDTKLHGKPDKTLRFSLCSDNLEGI
SEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEI
RDMMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAAENMLGSLLCLPGSG
SVLLDPYGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGVGSTSDDTEVREV
SSRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEESGHGSHHLTS
PPSQADSLLAMFDPLSSGEGSSTGTIVRPKVHYARPPHPPPDPPIPEASALGQDTRHSLF
TPHCLAQAELEHTKQRHSFPDRLVRSRSSDIVCPGRRPTSDPGLNRRVAVEERDPAGAFA
LGPSSSPSKDSLKGETEDRKDSDDEKSDRNRPWWKKRFVSAIPKAPIAAFRKRDKQEKDD
IVPERMPQDDPLPRQSTQAQAAEDILDKYRNIKRTSPSDGAAAGASYDGTGDLCVEDSVH
DSPREDTLQNISTDDLPDSASQTAQQHDSKFSFSDAKKKLRLALCSADSVALPIMTPATT
RNGLPDHMDPEDNEIVCFLKVQLAEAINLQDKNQMAQIQETTRCVSRFDARTCRKLLAAI
AEDYRKRAPYIAYLTRCRQGLQTSQAHLERLVQRVLRDKEVANRYFTTVCVRLLLEHMES
KMLDFIKAFQGCTASDDKTAAVEDFLRYLYGAMASDAIWQYASEDQLQDAQMAIERSVMN
RIFKLAFYPNQDGDILRDQLFHEHIQRLSKVVTANHKALQIPEVYLKETPWPSAQSEIRT
INAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIRANPPCLLSTVQ
YINNFYASRLSGEECYWWMQFTAAVEFIKTIDDRK
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccaccacctgaagcaggagcgactgtacgtg
gcgtcggagaagcagctgatccagaggctcaacagcgatgtgctgaagacagctgagagg
ctctatcgggccgcctggatcgccaagcagcagaggatcaaccttgatcgtctcatcctc
accagtgcggaagcctctccagctgaatgctgccaacatgccaaaatgctggaagacaca
cagtttgttgatggctacaagactctgggcttccaggagacaatctacggtgagttcgtg
gcccggttgagggagaaccccagactggtggcgtcatgcctggtggcaggagagaggctg
aaccaggagcatacccagggggtcatctatacagtcttcacctcactgtatggcaactgc
atcatgcaggaggatgagagctacttgctacaggtgttgcggtacctggtagagtttgag
ctgaaggagaatgacaaccctcgccgtctgttgcgaaggggaacctgtgccttcagcatc
cttttcaagctcttctctgagggcctgtactcagccaaactcttcctcactgccaccctc
cacgaacccattatgcagctgctggtggaagatgaagaccacctggagacagacccagcc
aaggtgacagagcgccttactccggcccagcaggagcgctttggagagaagggctccgag
ggttacaaacaacgggtgcaggcagcggtggaggccaatgaagccaagctggttgctctg
gtcaataagtttattggttacttgaagcagaacacctactgctttccccacagcctgcgt
tggattgtgtcccaaatgtacaagacattgtcctgtgtggagcgtcttgaagtgggtgag
gtgcgcaccatgtgcacagacctactgctgacctgcttcatctgcccagctatagtcaac
ccggagcagtatggtatcatctcagatgcccccatcaatgaagtggcccgcttcaatcta
atgcaggtggggcagcttttgcagcagttggccatggctgacgatgatgcagacccaagg
cggaaaagctgcttgtctaaatttgataagagttgtgtagctgcctttctggacgtggtg
attggaggtagagcagtcgagaccccaccaatgtcctcaatgaatcttctagaaggcctg
agcaggactgcggtctatattacgcatcatcagctgctggcactgttggactttgtgcga
agcgtgacggcgggagaccaccttcgggaggaggaccacatggctctggagaccctgctg
gccaatgtgccccagtctcgaactgtgaagagcaacagcctggagctcaccccatccaac
acccctcagctctccccagccaccactcccgccaacaagaagaacaggctccccatagga
caacacttagcagctataacatcctgggaccccacaaccaccactctgtctgctcacatt
ccattagtaaccccttttgcagctgctcgcagccgcagccgtaccaacatagcccaggag
ggggaggcagaggccagctcccaagagtccctgcaggagctgatgccagaggaggtgctg
gtgatttcactaggatctggtcctcagaatgtccctgggatgatgtcagagaatgaggtt
ttgaacctgcagatggctgatggggcccaaggggacggccatgctgatgacactaagctg
catggtaaaccagacaaaactctgcgcttctccctctgcagtgacaacttggagggcatc
tcagagggtccatctaatcgttctaactctgtgtcatccctggacctggagggagaatca
gtttctgagttgggagctggaccttcagggagcaacggggtggaggctctacagcttttg
gagcatgaacaggccaccactcaggacaacctggatgataaactgcgcaaatttgagatc
agagacatgatgggcctgacggacgatagggacatctctgagactgtcagtgaaacttgg
agtactgatgtgctcggcagcgattttgatcccaacatggatgaagaccgtctgcaggaa
atagcaggggcagctgcggagaacatgctcggcagcctgctgtgtcttcctggctcgggc
tcagtgctgctcgacccctatggctccacgatctcggagaccacaagcgaggcctggagt
gtggaggtcctgcccagcgactcagaagccccggacctgaaacaggaggagcgtctgcag
gagctggagagctgctccggtgttggcagtacctcagatgatacagaggtcagagaggtc
agctcaagacccagcactccaggcctaagtgttgtctcaggtatcagcgcaacctcagaa
gacatccccaacaagatcgaggacctgcggtcagagtgcagctcagactttggaggaaag
gactctgtgaccagtccagatggggaggagtcaggccacggatcacaccatctgacatct
ccaccctcacaagctgattccttattggccatgtttgatcccctctcctccggtgaaggt
tcctccactggaacaatagtgaggcccaaagtgcactacgccaggccccctcaccctccc
cccgaccctcccatccctgaagccagtgccctggggcaggacacacgccactctctcttc
acgccccactgcttggcccaggctgagctggagcacactaagcagcgccactccttccct
gacaggctggtccgtagccgcagctctgacatcgtgtgcccaggccgccggcccacaagt
gaccccggccttaatcggcgggtagcagtcgaagagcgcgaccctgctggggccttcgca
ttaggaccgtcctcgtcccccagcaaggactccctgaaaggagagactgaggacagaaaa
gacagtgatgatgagaagtctgatcgcaacagaccttggtggaagaaacgttttgtgtca
gccattcccaaagcaccgatagcagcatttaggaaaagggacaagcaggagaaagatgat
attgttccggagcgaatgccgcaagatgaccctttgcccagacagagcacacaagcgcag
gcagctgaagacatcctggacaagtacaggaacataaagaggaccagcccgagtgacgga
gccgcagccggagcttcttacgatggtaccggagatctttgtgttgaggacagcgtgcat
gactctccaagagaagacaccctgcagaacatttcaacagatgacctcccagactctgcc
agtcagacagcacagcagcatgactccaagttctctttcagtgatgcaaagaagaagttg
aggttggcgttgtgctctgcagactcagtggctctgcccatcatgacccctgcgaccact
cgaaatgggctgcctgaccacatggaccctgaagacaatgagatcgtctgcttcctgaag
gtccagctagcagaggccatcaaccttcaggataagaaccagatggcccagatccaggag
accacgcgttgcgtcagccgtttcgacgcacgtacctgcaggaagctgctggctgctatc
gcggaggattacagaaagcgggcaccatacatagcctatctaaccaggtgtcgtcagggc
ctgcagacctcacaggcccatctggagaggctcgtccagagggtgctgagagataaggaa
gtggcaaaccgctacttcaccactgtctgcgttcggctccttctcgaacacatggagtcc
aagatgctggacttcattaaagcgttccaggggtgcacagcatctgatgacaagaccgca
gcagtggaggattttctgcgctacttgtacggtgccatggccagtgatgccatttggcag
tatgctagcgaggaccagctgcaggatgcccagatggctatcgagcgcagcgttatgaac
cgcatcttcaaactggctttctacccaaaccaggatggagatattctcagagaccagctt
ttccacgaacacatccagcggctctcaaaagttgtgacggcgaatcataaagctcttcaa
atcccagaggtgtacctgaaggagactccctggccctctgcgcagtctgagatcaggacc
atcaatgcctacaagactccaagagacaaagtccagtgtatactgcgcatgtgttccacc
atcatgaacctcctcagtctggcaaatgaagactccgtccccggagccgacgactttgtc
cccgtgctcgtctttgtcctgataagggcaaacccgccctgcctgctgtccaccgttcag
tacatcaataatttctacgccagccggctgagtggggaggagtgctattggtggatgcag
ttcaccgcggcagtggaattcattaagaccatcgacgatcgcaagtga
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