Scomber japonicus (chub mackerel): 128365391
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Entry
128365391 CDS
T09718
Symbol
ptch1
Name
(RefSeq) protein patched homolog 1
KO
K06225
patched 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
128365391 (ptch1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
128365391
NCBI-ProteinID:
XP_053182079
LinkDB
All DBs
Position
9:17910145..17960898
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AA seq
1565 aa
AA seq
DB search
MASAANAPSEQENRDPDRPRITRRNRGDYTRNTPLDLEYLQRPSYCDADFALEQISEGKA
TGRKAPLWLRAKFQRLLFRLGCYIQKNCGKFLVVGLMIFGAFAVGLRAANLETDVEKLWV
EVGGRVNQELRYTRQKIGEEAMFNPQLMIQTPREDGANVLTVDALLQHLESAIRASRVHV
YLYNRQWKLEHLCYKSGELVTETHFMDQIIEKLHPCLIITPLDCFWEGAKLHSGMVYLPG
KDPLQWTNFDPKDFLEDLRRAKFPVEGFEDMLEKADVGHGYMDRPCLNPADPDCPLTAPN
KNSTKPFNVARALTGGCHGLSRKYMHWQEELIVGGTTKNGSGPLLSAQALQTMFQLMTPK
QMFEHFRGYEEVSHINWNEEKAAAILEAWQRRYSEAVLQSVAANSSQKVLSFTTTTLEDI
LKSFSDISVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCSL
LGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDI
FCCFYSPCANRVIQIEPQAYLDGADGSRYSPPPSYRTPPPSYRTPPPSYSSPPPSYSSHG
FAQQTQITMQSTVQLRTEYDPRTQAFYTTAEPRSQISVQPINPAPARNNPNNDYYSGNTS
SSRSSSSNRGNLNNNNTGSRNNGASRGSATFSHHHAPPPAAPTSSPSSVPQGDVASSTGQ
SPENNSSTRDLLSQFGEASLGLRCLEPPCSRWTLASFAEKHYAPFLLQPTTKVVVIVLFL
CLLGVSLYGTTQVRDGLELTDIVPRETSEYDFIGAQFKFFSFYNMYVVTQRADYAQKQPL
LHQLHQRFHTVRYVLKEDNGQLPRMWLHFFRDWLQGLQQAFDKDWEAGRITVNSYRNGSD
GGVLAYKLLVQTGRRDKPINFNLLTRQRLVDADGIINPGAFYIYLTAWVSNDPVAYAASQ
ANIRPHPPEWLHDRTDSMPETRLSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAIC
SNYSRQGLPSYPNGYPFLFWEQYVSLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVL
VLSLMTVELFGFMGLMGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRHKRAVLA
LEHMFAPVLDGAFSTLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYF
GPYPEVSPVDGRSRLPTPSPEAPPHVVHFSVRPHHTTAATTTSGAASDSSDSEYSSNATV
SGISQELQNYNLPSHRGQARAEEQQYHLQTSRGRVVRTEEERRAGSGHRRSARQPGPPAY
TVSSSVPSQGCDSGPQSGATQRNSSRDPKSQLHRQGPPPARPRMDAFETATEAGGHYGSH
GHREHSAGHRSRSSHNPQPNHHLPHQPNPTPYCQPITTVTASASVTVAVHPAPLSNQNPS
ASSYPGYTATDSYCPSGQVEPEPAFQDPHVPQDTHTGTRGIKVEAMELQDLEFEAAESNS
GRQAS
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgctaatgcgccctccgaacaggaaaacagagaccccgatcggccgagg
ataacgcggaggaacaggggggactatacccgcaacacaccgctggatttggagtatttg
cagcggccgagttactgcgatgcggattttgctttggagcaaatatccgaggggaaggcg
actgggaggaaggcacctctatggctgagagcgaagttccagagacttttattcaggctg
ggctgttacatacaaaagaactgcggaaagtttttggttgtgggcctcatgatttttgga
gctttcgctgtgggcttacgggcagctaatttggagacagatgtggagaaactatgggtg
gaagtcggtgggcgtgtgaaccaggaactgaggtacacacgtcagaagataggtgaggag
gcaatgtttaaccctcagctgatgatccagacgccgcgggaggacggagccaatgtttta
acagtggacgcgttattgcagcacctggaatcagccatccgagccagcagagttcatgtt
tacctttataacagacaatggaaattagaacacttatgctacaaatcaggagaactagtc
acagaaactcattttatggatcagatcatagaaaagctacacccctgcctcatcatcacc
cctttggactgtttctgggagggagccaagctccactctggaatggtctatctcccaggt
aaagaccctttacaatggaccaactttgaccctaaagatttccttgaggacttgcgaagg
gcaaagttccctgtggaaggctttgaggacatgttggagaaggcagacgtcggacacggc
tacatggatagaccctgtctgaaccctgcagaccccgactgccccctcactgcaccaaac
aagaactcaacaaagccattcaacgtggcgcgggccctgactggcggttgccatggtctg
tccaggaagtacatgcactggcaggaggaactgatcgtaggagggaccaccaagaacggc
agtggacccctgctcagtgcccaggccttacagaccatgttccaactgatgactcccaag
cagatgtttgagcactttcggggctatgaggaggtttcccacatcaactggaatgaagaa
aaggctgcagctatactggaagcctggcagaggagatactctgaggcggtgctgcagagt
gtggcagcaaattcgtctcagaaggtcttgtctttcaccaccactactctggaagatatt
ctcaagtctttctctgatattagtgtcatccgtgtggccagtggttacctgctgatgctg
gcctatgcgtgtctcactatgctgcggtgggactgtgccaagtctcagggggctgtgggg
ctggcgggtgtcctgctggtgacactgtctgtagcagctggcttgggcctctgctctctc
cttggcatctccttcaatgccgccactacgcaggtgttaccattcttggctctgggtgtt
ggagtggatgatgtcttcctccttgctcatgccttcagtgagactggacagaacaagagg
atcccattcgaggatcgtacaggcgagtgtctgaagaggacgggagccagcgtggctctc
acctccatcagtaatgtcacagcattcttcatggcagccctcatccccatcccagcgctc
agagctttttctctacaggctgcagtggtggtggtgtttaactttgccatggtgctgctc
atcttccccgccatcctcagcatggatctctacagacgagaagacagacgtttcgacatt
ttttgttgcttctacagcccatgtgccaatcgtgtgattcagattgagcctcaggcgtac
ctggatggggccgacgggagtcgctacagccctcccccatcctaccgcaccccacctccc
tcatatcgcacacctcccccaagctacagcagcccccctccctcctacagcagccatggc
tttgcccagcagacccagatcaccatgcagtccactgtgcagctcaggacagagtatgat
ccccgcacgcaggctttctacaccacagctgagcccagatcccagatttccgtgcagccc
atcaacccagcaccagccaggaataatcctaataatgactattacagtggcaacaccagc
agcagcaggagcagtagcagcaaccgtggaaatctcaacaacaacaacactgggagccga
aataatggggcatctcgaggttctgccactttctcccatcaccatgcacctcctcctgct
gccccgacctcaagtcccagctcagttccccagggtgatgttgcctcatcaactggccag
agcccagagaacaacagctccacacgggacctgttgtcccagtttggtgaagcatcactg
ggtctgcgatgcctcgagcctccctgctcccgctggacactggcttcttttgctgagaag
cactacgctccattccttctgcagcccaccaccaaggtggttgtgattgtgctgttcctc
tgcctgctgggagtcagtttatatgggaccacccaggtgcgggatggcctcgaattgacg
gacatcgtacccagagaaaccagcgagtatgacttcatcggcgcccagtttaagttcttc
tctttctacaacatgtatgtggtgacacagcgggctgattatgcccagaaacagcctctg
ttgcaccagctccaccagaggttccacactgttcgctatgtgctgaaggaggacaatgga
cagctgccccgcatgtggcttcacttcttcagggactggctgcaaggtctgcagcaggcg
tttgacaaggactgggaggctggccgcatcactgtaaacagttacaggaatggttctgat
ggtggcgttttggcgtacaagcttctggtgcagacaggacgcagggacaagcccatcaac
ttcaacctgctgactcgtcagaggcttgtggatgcagatgggatcatcaaccctggggct
ttctacatctacctaaccgcctgggtcagcaatgatcctgtggcgtacgctgcttcacag
gccaacattcgcccacaccctccagagtggctccacgaccgtaccgattccatgcccgag
acacgcctcagcatcccggctgctgagcctatcgaatacgcacagttccccttctacctc
aatgggctccgggagacgccacagtttgtggaggccatcgagagtgtgcgggccatctgc
agcaactacagccgacaaggcctgccctcttaccccaacggctaccctttcctcttctgg
gagcagtatgttagtctgcgccactggctcttgctgtccatcagtgtcgtgctggcctgc
acctttctggtgtgtgccctcttcttgctcaacccatggaccgctggcatcattgtgttg
gtgctgtctctcatgacagtagagctgtttggcttcatggggctgatgggaataaaactg
agtgccgtccctgtggtcattctcattgcctctgtcggcattggagtggagttcaccgtc
catgtggcactggcgttcctgacagccataggggatcgtcacaagcgggcagtgctggca
ttggagcatatgtttgcaccagtgctcgacggagccttttccaccttgttaggggtccta
atgctcgcaggctctgagttcgactttatcgtcaggtatttctttgcagtgttggccatc
ctaacagttcttggagtactgaatggattggtccttcttccagtattactgtcatacttt
gggccctatccagaggtgtctccagtcgatggtcgtagccggttacccaccccatcccca
gaggccccacctcacgtggtccacttctcagtccgtcctcaccacaccaccgctgccacc
accacctctggtgcagcttctgactcgtcagactctgaatacagctctaacgccacggtg
tcaggtatcagtcaggagctgcagaactacaacctgccctcacacagagggcaagccaga
gcagaggagcagcagtaccacctccagaccagcagaggcagagtagtcaggacagaggag
gaaagaagagcaggatcagggcataggcgctcagccagacagcctggtcctccagcctac
actgtgtcctcgtcggtcccctctcagggttgtgattctgggccccagtctggggctact
cagcgcaacagcagcagggaccccaagagccagctgcaccggcagggcccgcccccagcc
cgcccgcgcatggacgcttttgaaactgctactgaggctgggggccattatggctcacat
ggccatagagaacactcagcaggccacagatcccgctcttcccacaacccacagcctaat
caccacctcccgcaccaacccaaccctaccccttattgccagcccatcaccacggtaaca
gcgtcagcctcagtcactgttgctgtacacccagcccccttgtccaatcagaacccctcc
gcgtcctcttacccaggatacactgcaacagacagttactgcccatcggggcaggtggag
ccagagcctgcattccaggacccacatgtgccacaggacacccacacaggcaccagagga
atcaaggtggaggccatggagctccaggatttggagtttgaggcagctgaaagcaacagt
ggcagacaggctagctga
DBGET
integrated database retrieval system
