KEGG   Scomber japonicus (chub mackerel): 128365757
Entry
128365757         CDS       T09718                                 
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03013  Nucleocytoplasmic transport
sjo04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    128365757 (seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    128365757 (seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sjo03019]
    128365757 (seh1l)
   04131 Membrane trafficking [BR:sjo04131]
    128365757 (seh1l)
Messenger RNA biogenesis [BR:sjo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     128365757 (seh1l)
Membrane trafficking [BR:sjo04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    128365757 (seh1l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WDR55 EIF3I Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 128365757
NCBI-ProteinID: XP_053182300
LinkDB
Position
10:23345467..23353668
AA seq 415 aa
MFVARSISADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHPP
MFAVGSDDSNVTYGGKVQIYEYNENTRKYAKAETLMTVTDAVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLVPMRKESTSTGPTKFEVQIVAQFDNHNSQVWRVSWNITSTLLASSGDDGC
VRLWKANYMDNWKCTGILKGDGSPLTGTSGQPTAMSMVVGSSVQTSQNALNGMSAGRYFF
PPLDPPREGTRYGHLLPPSSLIEHCDAEPVQSQQLALPYRYSSRALVPLPEAEGQ
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgtttgtagcccgtagtatctcagcagatcataaagatctcattcacgatgtatcgtat
gatttccacggccggagaatggcaacctgctccagtgaccaaagtgtgaaggtttgggac
aaaagtgagaatggagagtggcactgtacagccagctggaagacacacagtggatcagtg
tggagagtgacctgggctcatccagaatttgggcaggttctagcttcatgctcctttgac
agaacagctgctgtctgggaggagattgtcggagagtcaaatgacaaacagagaggactg
agccactggataaaaagaaccacactggtggacagtagaacttcagtgactgatgtgaag
tttgcccctaaacacatgggcctgatgttgaccacctgctctgcggatggagtggtgagg
atctatgaggctcctgatgtcatgaacctgagtcagtggtccctgcagcacgagatctcc
tgcaagctcagctgcagctgtatctcttggaatccctccagctctcgtgcccacccacct
atgtttgcagtggggagtgacgacagcaacgtaacgtacggtgggaaagttcagatctac
gagtacaatgaaaacacaaggaaatatgctaaagcggagaccctgatgactgtcacagat
gcggtacatgacattgcgttcgctccaaacctggggagatcattccacgtcctcgccata
gcaacaaaagatgtcagaatctttaagcttgttcctatgaggaaggagagcacctctacg
ggacccaccaagtttgaagtgcagatcgtggctcagtttgacaaccataattcccaggtg
tggcgtgtgagctggaacatcaccagcaccctgctggcctcctccggggatgacggctgt
gtgcgcctctggaaagctaactacatggacaactggaagtgcacgggcatcctgaaagga
gacggcagcccactcaccggcacgtccggtcagcccacggccatgagcatggtggtgggc
tcctccgttcagacctcccagaacgccctgaacgggatgtccgctggaaggtatttcttt
ccgcctctggatcctcccagagaagggaccaggtatggtcacctgctgcctccctcctcc
ctcatagagcactgtgatgctgagcccgttcagtctcagcaactggctcttccctacaga
tactcctctagagcacttgtgcccttacctgaggctgaagggcagtag

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