Scomber japonicus (chub mackerel): 128365757
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Entry
128365757 CDS
T09718
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1
KO
K14299
nucleoporin SEH1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128365757 (seh1l)
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
128365757 (seh1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128365757 (seh1l)
04131 Membrane trafficking [BR:
sjo04131
]
128365757 (seh1l)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128365757 (seh1l)
Membrane trafficking [BR:
sjo04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
128365757 (seh1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
128365757
NCBI-ProteinID:
XP_053182300
LinkDB
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Position
10:23345467..23353668
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AA seq
415 aa
AA seq
DB search
MFVARSISADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHPP
MFAVGSDDSNVTYGGKVQIYEYNENTRKYAKAETLMTVTDAVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLVPMRKESTSTGPTKFEVQIVAQFDNHNSQVWRVSWNITSTLLASSGDDGC
VRLWKANYMDNWKCTGILKGDGSPLTGTSGQPTAMSMVVGSSVQTSQNALNGMSAGRYFF
PPLDPPREGTRYGHLLPPSSLIEHCDAEPVQSQQLALPYRYSSRALVPLPEAEGQ
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtagcccgtagtatctcagcagatcataaagatctcattcacgatgtatcgtat
gatttccacggccggagaatggcaacctgctccagtgaccaaagtgtgaaggtttgggac
aaaagtgagaatggagagtggcactgtacagccagctggaagacacacagtggatcagtg
tggagagtgacctgggctcatccagaatttgggcaggttctagcttcatgctcctttgac
agaacagctgctgtctgggaggagattgtcggagagtcaaatgacaaacagagaggactg
agccactggataaaaagaaccacactggtggacagtagaacttcagtgactgatgtgaag
tttgcccctaaacacatgggcctgatgttgaccacctgctctgcggatggagtggtgagg
atctatgaggctcctgatgtcatgaacctgagtcagtggtccctgcagcacgagatctcc
tgcaagctcagctgcagctgtatctcttggaatccctccagctctcgtgcccacccacct
atgtttgcagtggggagtgacgacagcaacgtaacgtacggtgggaaagttcagatctac
gagtacaatgaaaacacaaggaaatatgctaaagcggagaccctgatgactgtcacagat
gcggtacatgacattgcgttcgctccaaacctggggagatcattccacgtcctcgccata
gcaacaaaagatgtcagaatctttaagcttgttcctatgaggaaggagagcacctctacg
ggacccaccaagtttgaagtgcagatcgtggctcagtttgacaaccataattcccaggtg
tggcgtgtgagctggaacatcaccagcaccctgctggcctcctccggggatgacggctgt
gtgcgcctctggaaagctaactacatggacaactggaagtgcacgggcatcctgaaagga
gacggcagcccactcaccggcacgtccggtcagcccacggccatgagcatggtggtgggc
tcctccgttcagacctcccagaacgccctgaacgggatgtccgctggaaggtatttcttt
ccgcctctggatcctcccagagaagggaccaggtatggtcacctgctgcctccctcctcc
ctcatagagcactgtgatgctgagcccgttcagtctcagcaactggctcttccctacaga
tactcctctagagcacttgtgcccttacctgaggctgaagggcagtag
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