Scomber japonicus (chub mackerel): 128366178
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Entry
128366178 CDS
T09718
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
128366178 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128366178 (slx4)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128366178 (slx4)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
128366178 (slx4)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
128366178 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
128366178
NCBI-ProteinID:
XP_053182838
LinkDB
All DBs
Position
2:complement(28432910..28443731)
Genome browser
AA seq
1772 aa
AA seq
DB search
MNDSDQDFVDLSSKPLKRVRKPRQPRQAEHPPSSQAGNGDKRRRNNRRDGGSGSKCVAAV
GGTQSVCIEAEQLVVSGGVGLDSGDTGSSVSAHSFASAAERGLCTKDKVLNRMQQFRRVN
AQRLQHNNQSLPTGQEKDRNTAPPLGERRDTPESTSSGLHLNPPDSDEALALRLQQELDR
EAAEAQSGDLEDRGLFFCQICQRDLTHMTPEGRAQHLNRCLDESETLIPAPPPPPGVPDC
PICGKKFKSQKSRSTHLKRCSSDMGVSPAVLLQALQRQTEESQSTATANTLAQTGGTKRK
GPPKPGLPVSKKPRKKTEPLDEDTMVALALSSSLLEKERESQTEAAAHGTSVMPVLKWRP
DTVGKGHGKRKKGAIPRPPPLLLVQEAEAALTRLQERVSALLLRSRAPSPPTPTRCPSGL
PGWSGAAPLWQKSALLDQGSTSLSDFYAPELREFITPWESATTDVASFSTNNKPDTSLQG
VTEGTPVTKTQPSVTPSSSQTAASSPAPSTPGTGQLAVGSQVLRDLMELAEDGMTLTQCG
YTAPGPVKDQSARLSANLHLSGFVLDEAEEHADLYVSGFLPENSHANAQDTHRQAKRTTD
QPARDKERLSHQSVALSRLASELSSMVNNPQFSDVQLQVDSGEVYFAHSFMVYARCPLLA
EMVHESGFGVQEEGMPAAQRVLMSDVPGEAVLALLQYLYAAQFSIPASLQPHVLELASRF
DLPELQQLCELHQAEADYTNQEDHLNNQTDLAFMELLRSMWNEEDDDDDDDDGKQTDGDG
GREERGLEHCQDADVESGDRELQEEQVNEEEMEEIYEFAATQRKREEEDDSVEEKVDEEE
NGEVFTKLTEPKRSSRVFSDKSLQPNSSLDRSYNRLFSDSWGVYREEEEEPSTLRTTSPP
PKTHILQSQQNQSPHKPSSELSGRTLLQSSASVVDDHSLSPRPSTSNLPVPGLSPGIVAD
WDGGGDADEPEQCLPLKRESQGPRSICISLSPDSPQKEKEPELVVLSDSSEEMEVDVAVL
NSCNPSPPSPFTAQTRQSYTQLIPKFKDPSSMDFSPSGPSSVTVSSQPGSGDDQSPVDCS
PEVSWLIPSTPVQLQRTSTSSSTQTKSSMCRTQLFPKPSSPSSTVFASPALPFNNRPQTS
NNPTRDSAHISPTDGSLSRLKQDRVGACSSSLDLNFCPKRTSSHIMSEDREVESPVLKGG
QFSHLSSSTHPYVLEPPSRQNISLHLQLHPHSSTPLHSDLHQPPVLLADSPLHTEPDKWR
LTSQERDRVPSESPEKTELGSFHLSPLSDPSGQPSSSSHKSFQSSQRRSKSSSQSIHSVE
SSNHYCTGSELRSGIRIKDRGKERDCESKGTDDDGEQEEAKGKSGEAEAADSSFQQSFTD
EPPIAFNDSWGFDACNDLGENPGCFSLRLEDSEASSLQEHSSENTKSGHHVHQNGVTASA
PSKSLSSQTSTSQQALRGPSFTPSPPNPTTLTTPDKINSLLDSKIWDSWEEEEEEVVLPL
SQRVNPLKTPVRSHNKKRRSLVPITPMPHYSDMDTPDLKNKLNRFGVRPLPKRQMILKLK
EIHQYTHQLVNSDSEDETPFAGGTAQILKPPPTSSAAAGSRPVSCAQTVKFKEPIAISPV
KLSREEDAEPLSASQGSNTSSTAASEESERSNPEICLSSDGDSDSDGGISASQSATRLHD
RLRAVRSFILSDSGLYSQILQYKPLVLSQLQQRLKAAGIRLGAAKLMDYLDSQCITFTTA
KPGNSALSRRRGKKTSKGAKGASRKRDANAVL
NT seq
5319 nt
NT seq
+upstream
nt +downstream
nt
atgaacgactcagaccaggattttgtagacctcagctcaaagccactgaaacgagtccgc
aagcctagacagccaaggcaagcagagcatccgccctccagtcaggcaggcaatggagac
aagaggagaagaaataacagaagagatggtggctctgggtctaagtgtgttgcagctgtc
ggtgggacgcagtctgtttgtattgaggcagagcagcttgtggtcagtggtggggttggg
cttgattcaggagacactgggtcatctgtttctgcccattcatttgcttctgcagcagag
agaggtttgtgcacgaaagacaaagtgctcaacagaatgcaacagttcaggagagtcaat
gctcagaggctgcagcacaacaatcagagcttgccaacagggcaggagaaggaccgaaat
actgcccctccactgggagaaagacgagatactccagaatccaccagttcaggtctccat
ctgaatcccccggacagtgacgaggctctggccctgcggctgcagcaggagctggacagg
gaggcggcagaggcccagtcgggggaccttgaggacagaggcctcttcttctgtcagatc
tgtcagagagacctgacacacatgacccctgaagggcgcgcgcaacacctcaacaggtgt
ttggatgagagtgaaaccctcatcccagctcctcctccacctcctggtgtccctgactgt
cccatctgtggaaagaagttcaagtcccagaagagtcgctccacccacctgaagcgctgc
tcctcagacatgggcgtctcccctgctgtcctgctgcaggctctgcagagacaaactgaa
gaaagccagagcactgccactgctaacacacttgcacagactggaggcaccaaaaggaaa
ggtccacccaagccgggcctcccagtgagtaagaagcccaggaagaagactgaacccctg
gatgaagacactatggtggccctggctctttcgtcctccctgctggagaaggagagagag
tcacaaacagaggctgctgcccatggcacctctgtgatgcctgtgttgaagtggaggcca
gacacagtaggtaagggtcatgggaagagaaaaaagggcgccataccgcgtcctcctcca
ctcctcctcgttcaggaggctgaggcggccctgacgaggctgcaggaacgcgtttctgct
ctcctcctacgcagtcgggctccatctccccccaccccgacccgctgccccagcggtctg
cccggatggagtggtgctgcccccctctggcagaagagtgcactgcttgaccaaggctcc
accagtttgtctgatttctacgccccggagctcagggagttcatcactccttgggaatcg
gcaacaactgatgtagcctccttcagcaccaacaataagcccgatacgtctctccagggc
gtgactgaaggaacccccgtcacaaaaactcagccctccgtcacaccctcctcctcccag
acagctgcctcctctccagctccctccaccccggggactgggcaactcgcagtgggcagc
caggtcctccgagatctgatggagctggctgaagacggcatgacgctcacacagtgtggc
tacaccgctccaggccctgttaaagaccagagcgccaggctgtctgcaaacctccatctg
agcggcttcgtgctggatgaggcagaagagcacgctgatctctatgtgagcgggttccta
ccagaaaattcacacgcaaacgcacaggacacccaccgccaagcaaaaaggacgactgat
cagccagcacgagataaagagcgcctcagccaccaatcagtggcgctgtccagactggca
tcagaactgagcagtatggtgaacaaccctcagtttagtgatgtgcagctccaggtggac
agtggagaggtctactttgcccattccttcatggtgtatgcacgctgccccctgctggca
gaaatggtgcatgaaagtggtttcggggtgcaggaggaaggcatgccagcagctcagcgg
gtgttgatgagtgacgttccaggagaggcggtgttggctttgctgcagtacctctacgct
gcccaattctccatcccagcatcactgcagcctcatgtactggagctggcatccaggttt
gatctgccggagctgcagcagctttgtgagcttcaccaagctgaggcagactacacaaac
caggaggaccatctcaacaaccaaacagacctggccttcatggagctcctccgctccatg
tggaacgaagaggatgatgatgatgatgatgacgacggcaagcagacagatggggatgga
ggaagagaagagagaggtctagaacattgtcaagacgctgatgtcgaatcaggcgacaga
gagctgcaagaagaacaggtgaacgaggaggagatggaggagatttatgagtttgctgcc
acgcagagaaagagggaggaggaggatgacagcgtggaggagaaggttgacgaagaagaa
aatggagaagtgttcacaaaactgacagaacccaaaagaagctcaagagtattcagtgac
aaaagcctgcagccaaattcaagcctagaccgcagctacaaccgcctcttctcagactct
tggggcgtatacagagaagaagaagaagaaccctccaccttacgtactacctctccccca
ccaaaaacgcacatcctccaatcccagcaaaaccagtcccctcacaaaccctcatctgaa
ctgtctggcagaactttgcttcagtcctcagcaagcgtagtcgatgaccattccctcagc
cctcgacccagtacatccaacctgcctgtcccaggtttgtctcctgggatagtggctgac
tgggacggtggtggagatgctgatgaacctgaacaatgtttgcctttgaagcgagaaagc
caaggtcctcgtagcatttgtatctccctttctcctgattccccccagaaagagaaggaa
ccagagctagtagttttgtctgactcaagcgaggagatggaggtagatgttgctgttctt
aactcttgcaatccctctccaccttctccctttactgcccagactcggcaaagttacacc
cagctgatcccaaaatttaaagatcccagtagtatggattttagtcccagtggtccatct
tcagtcacggtttctagtcaaccaggttccggcgatgaccagagtccggtagactgttct
ccagaggtttcctggttgatcccatccacaccagtccagcttcaaagaaccagcacgagc
agctccactcagaccaaaagcagcatgtgcaggacgcagctgttccctaaaccttcatca
ccctcatccactgttttcgcttctcctgctttaccgtttaacaacagaccgcagacctca
aacaatcccaccagagattcagcccatatcagcccaacagatggcagtctctccaggttg
aagcaggacagggtgggggcctgcagctctagtttggatctcaacttttgtcctaaaaga
acaagtagtcacattatgagtgaggacagagaagtggaatcgcctgtgttaaaaggaggt
cagttctcacacctctcaagctcaacccacccctatgtcctcgaacctccttcaaggcaa
aatatctctcttcacctccagctgcatcctcacagcagcacacccctgcattcagacctt
caccagccccctgtccttcttgctgactccccgctccacaccgagcctgataagtggagg
ctgacaagtcaagaaagggatagggtgccctctgaaagcccagagaagacagaattaggg
agctttcatctctcccccttgtctgacccttcaggccaaccctcttcttcttctcacaaa
agttttcagagttcacagagacgcagtaaatcctcaagtcagagtatacattctgtagag
tccagcaatcactattgcacagggtctgagctgaggagcggaataagaattaaggacaga
ggaaaagagagagattgtgaaagtaaaggcacagatgatgatggggagcaggaagaagca
aaaggaaaaagtggagaggcagaagctgcagactccagttttcagcagagcttcacggac
gagccccccatagcattcaatgactcgtggggcttcgacgcctgcaatgacttgggagaa
aatccgggctgcttcagtctgaggcttgaagacagcgaagcatctagcctacaagagcac
agctcagaaaacaccaagtctggtcatcatgtccaccagaacggtgtgactgcctctgct
ccatccaaatccctcagttcacaaacatccaccagtcaacaggctcttagaggcccctcc
ttcaccccctcaccgcctaatcccacgacccttaccacaccagataaaattaacagcctc
ctggactctaaaatatgggacagctgggaggaggaagaggaggaggttgttcttcccctc
tctcagagggtgaacccacttaaaaccccagtgcgatcgcacaataaaaagcgtcgttct
ttggtgcccatcactcccatgccgcactactctgacatggacacaccggacctcaagaac
aaactgaacaggtttggtgttcggcctttacccaagcgccagatgatcctcaaattgaag
gaaatccatcagtacacccaccagttggtcaactctgactctgaagatgagacacccttt
gcggggggcactgctcagatattaaaaccccctcccactagttcagcggccgctggcagc
aggccggtctcctgcgcccagaccgtgaagtttaaagagcccattgccatctctcctgtg
aaactcagcagagaggaggatgcagagccgctgtctgcctcacagggctccaacacctct
tcaactgctgccagtgaagaatctgaaaggtcaaacccagagatatgtctttcctctgat
ggcgactcagacagcgacggcggcatctcagcgtcacaatcggccacgcgcctccacgat
cgtctgcgggcagtgcgctccttcatcctgtctgactcaggactatacagccagatcctc
cagtacaagcctctggtcctgtcccagctccagcagcgactgaaagcagcagggatccgc
ctgggcgccgccaagctgatggactatttggactcccagtgcatcaccttcaccacagcc
aagccgggcaactcggcactcagccgcaggcggggcaagaagacaagcaagggggcaaag
ggagcgagcaggaaaagagatgccaatgctgtgctttaa
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integrated database retrieval system
