Scomber japonicus (chub mackerel): 128366227
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Entry
128366227 CDS
T09718
Name
(RefSeq) endoribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128366227
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
128366227
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH
zf-CCCH_2
DUF7523
Stonin2_N
DUF1719
Motif
Other DBs
NCBI-GeneID:
128366227
NCBI-ProteinID:
XP_053182885
LinkDB
All DBs
Position
10:6296640..6359897
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AA seq
813 aa
AA seq
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MVPTLHCISSEERRTSEDPLEAITSTMQRVEDELQKMTDPLCKEKSDTTNHILDGVGLVT
LVTKKMKEKLVLAVSPDSCTPAQCEGQGTARLAAGDVTPGQAMAAMHKIASTDHRPPPIC
CDARLGGCRSRNCVKVTVLGNINRSEVTADIWNKSGKRLTVKSLHEYHPEADVIYAAEKR
PRCSRMDQALSDQSSTSDQLEPDSEEFQQRVDFFRKLGYTTTEVKAALRKLGLSTDTNSM
LGELVRSRTITAPFISNTDNNERSAGPKDSLLPASWATGPLRIITPHLGDKKNTETELRP
VVIDGSNVAMSHGNKEVFSCRGIQLAVNFFLDRGHKAITVFVPKWRTEQPRPDAPITDQH
ILTELEKRKIVVFTPSRRVGGKRVVCYDDRFIVKWAYESEGVIVSNDTYRDLQGERPEWK
KCIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLPTEQKRQLCPYDKKCTYGIK
CKFYHPERANQSYLSLADELREKAQISTINDEILSPKQLQSDSGPGYTCPYPQESNMEHI
KDQHISSHPNQVSENKLLYWDDPRNSPNHIRCSVIGGQCQKEWPQLHSVPNHYYANISHE
YLDSGLGSYESQYSDVPHCLSNSHRLRPQQQSALAGSRHASVHLEKNNTSQSCRCCSQVA
PPTAHQHDRRSMDSKGQLKYDTYPPHMLPPGVPHQHSLPSNFQYNGGPHHQQNYWSDPFQ
GLHHARPCSLPTVHSSNPNNSGCSYKGQQYHSWGQKQPPNVAFNQQRLELRKKLQAIFNP
HEVDTVMEMFPHLMDAEKLAAEILNLKVHRGIF
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggttccaaccctacactgcatcagctctgaggagcgcaggacttcagaggaccctctt
gaagccataacatcaaccatgcagagagttgaagatgaactgcagaagatgactgacccg
ttgtgcaaagaaaagtcagacacaaccaatcacatattggatggggtgggtcttgtcacc
ctggtaaccaagaaaatgaaggagaagcttgttctggccgtgtctccagacagctgtaca
ccagcccagtgtgaaggtcagggtacagcccgactagcagcaggagatgtcacaccagga
caggccatggcagccatgcacaaaattgcctcaacagatcacagacctccacccatctgc
tgtgacgccagattggggggttgcagaagtcgaaactgtgtcaaagttactgtacttgga
aacattaacaggagtgaagtgactgctgacatatggaacaagagtggaaagagactcaca
gtgaagtcactccatgaatatcatccagaggcagatgtaatatatgctgctgaaaagagg
cccagatgctcaaggatggatcaggcactctccgaccagagctcaacttcagaccagctg
gaaccagacagtgaggagttccagcaaagagtggacttcttcaggaagctgggttacacc
accacagaggtgaaggctgctctgaggaaattaggcctgagcacagacaccaactcgatg
cttggagagctggtaaggagcaggaccatcacagcacctttcatatccaacactgacaat
aatgagagaagcgcaggcccaaaagactctctactgcctgcaagttgggccactggacct
ctcagaatcatcacaccacatcttggggacaagaagaatacagagacagagttgaggcct
gttgttattgatggtagcaatgttgccatgagccacggcaataaggaagtattctcatgc
cgaggcatccagctggcagtgaacttcttcctggacagaggtcataaagccataactgtg
tttgttcctaaatggcgcacggagcagcccagacctgatgcccctataacagatcaacac
atcttaactgagcttgagaaaaggaaaatagtggtcttcactccatcacgccgtgttggg
gggaagcgagtggtttgctatgatgaccgttttatcgtcaagtgggcatatgagtcagaa
ggtgtgattgtatcaaacgacacctaccgtgacctgcaaggagaaaggcctgagtggaag
aaatgcatcgaagagaggctcctcatgtactcctttgtgaatgacaaattcatgccccct
gatgatcctctgggacgtcatggacccagtcttgacaacttccttaggaaaaagcctctg
cctacagagcaaaagagacagctctgtccatatgacaaaaagtgcacttatggcatcaag
tgtaagttctaccatccagagcgggcaaaccagtcctacctgtccttggctgatgaattg
agagagaaagctcagatttctactataaatgatgaaatattatcacccaaacagcttcag
tctgattctgggcctggttacacctgtccctatcctcaagaatctaacatggagcacata
aaagaccaacatatttcttcacatcccaatcaggttagtgaaaataaactgctgtactgg
gatgatcctagaaacagtccaaatcatatacggtgctctgtaataggaggccagtgtcag
aaagagtggccccagctgcactcagtgcccaatcattactatgccaacatctctcacgag
tacttggattctggccttggctcttatgagagccagtactctgatgttccgcattgcctc
agcaactcccacaggctcaggccccagcagcaaagtgccctcgctggatccagacatgcc
tcagtgcatttagagaaaaataacaccagccagtcctgcaggtgttgctcccaggtagca
cccccaacagctcaccagcacgatcgtagaagcatggactccaagggccagctcaaatac
gacacctaccctcctcacatgctcccacctggtgtaccacatcaacacagccttcccagt
aattttcagtataatggaggtcctcatcatcagcaaaattactggtctgatccctttcag
gggctgcaccatgccaggccatgtagtctccccacagtccattcctcaaaccccaacaac
tctggctgttcatataagggccagcagtaccattcctggggccaaaaacagccgcctaat
gtggcatttaaccaacaaaggttggaactccgcaagaaactgcaagccatcttcaaccca
catgaggtggatacagttatggaaatgttcccacatctgatggacgctgagaaactggct
gctgagatcttaaacctgaaggttcatagagggatattctga
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