Scomber japonicus (chub mackerel): 128366241
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Entry
128366241 CDS
T09718
Symbol
zgc:136908
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04137
Mitophagy - animal
sjo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128366241 (zgc:136908)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128366241 (zgc:136908)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128366241 (zgc:136908)
03009 Ribosome biogenesis [BR:
sjo03009
]
128366241 (zgc:136908)
04131 Membrane trafficking [BR:
sjo04131
]
128366241 (zgc:136908)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sjo04147
]
128366241 (zgc:136908)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
128366241 (zgc:136908)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
128366241 (zgc:136908)
Membrane trafficking [BR:
sjo04131
]
SNARE
SNARE associated proteins
Others
128366241 (zgc:136908)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
128366241 (zgc:136908)
Exosome [BR:
sjo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128366241 (zgc:136908)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
RNA_helicase
AAA_14
Vps4_C
AAA_28
NPHP3_N
Parvo_NS1
ATPase_2
nSTAND3
Mg_chelatase
AAA_7
DUF815
ATPase
AAA_18
IstB_IS21
ABC_tran
AAA_17
NACHT
TsaE
AAA_24
Sigma54_activat
ResIII
Viral_helicase1
NB-ARC
PhoH
SLFN-g3_helicase
Cytidylate_kin
KAP_NTPase
Zot
AAA_6
Motif
Other DBs
NCBI-GeneID:
128366241
NCBI-ProteinID:
XP_053182904
LinkDB
All DBs
Position
2:complement(28810033..28815849)
Genome browser
AA seq
807 aa
AA seq
DB search
MCLLFGSPKGEDFSTAILKQKHRPNRLIVDEALNEDSSIVSLSQNKTEELQLFRGDTVVL
RGRKRRQTVCIVLTDATCGDERIRMNRVTRNNLRVRLGDVISIHACPDIKYGKRIHILPI
DDTIEGLTGNLFEVFLKPYFLEAYRPVHQGDVFLVRGSMRAVEFKVVETDPSPHCIVAPD
TVIYCEGEPIKREDEEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPGLFKTIGVKPPR
GILLYGPAGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA
IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSVDTALRR
FGRFDREIDIGIPDSTGRLEILQIHTKNMKLADDVDLERIATETHGHVGADLAALCSEAA
LQAIRKKMILIDLEDDTIDADLLNSLAVTMDDFQWALSQSNPSALRETVAEVPHVNWEDI
GGLDDVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQANF
VSIKGPEMLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKSRGGGGGDAGGAADR
VINQILTEMDGMSDKKNVFIIGATNRPDIIDAAILRPGRLDQLIYIPLPDKRSRSAILRA
NLRKSPIARDVDLEYLSGITEGFSGADLTEICQRACKLAIREAIEAEIKAERQRQSRPGI
PMDEDFDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPSATGS
QSGGQGSGSGSGRPGLYREEGDDDLYQ
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtgcctcttgtttggaagcccaaagggagaagatttctcaactgccatcctgaagcag
aaacacagaccaaacagactcattgtggatgaagctctcaatgaagacagcagcattgtc
agcctatcacagaacaagacagaggagctgcagctcttccggggggacacagtggtgttg
agggggcggaagcgccgccagacagtgtgcatagtcctgaccgatgccacctgcggagat
gaacggatccgtatgaaccgtgtaacccgcaacaacctgcgtgtccgccttggtgacgtc
atcagtattcatgcctgccctgatatcaagtatggaaagaggatccatatcctccccata
gatgacaccattgagggcctgacagggaacctctttgaggttttcctcaagccatacttt
ctggaggcttaccgccctgtacatcaaggtgacgtcttcctggtaagggggagtatgcgg
gcggtggagttcaaggtagtggagacagatcccagccctcactgtatcgttgcccctgac
accgtcatttactgtgagggagagccaatcaaaagagaggatgaagaggagagtcttaat
gacattggctatgacgacatcggaggttgtcgaaagcagcttgcccagattaaagagatg
gtggagcttcctctcagacaccccgggctttttaagacgataggagttaagccccccaga
ggtatcctgctatacggccctgcaggcacagggaagaccctggttgcgcgagccgtagcc
aacgaaaccggcgccttcttcttcctcatcaatggtcctgagatcatgagtaagctggct
ggagagtcagagagcaacctgagaaaggcctttgaggaagcagagaaaaacgctccagcc
atcatctttattgatgagctggatgccatcgcccccaagagagagaagacccatggagaa
gtggagaggcgtatagtgtcccagctcctgaccctgatggatggcctgaagcaaagagct
catgtggttgtcatggcagcaacaaaccgacctaacagtgtggatactgctctcagacgc
tttggcaggtttgaccgtgagatcgacattggaatcccagattcaactggcagactggaa
atcctgcagatccacaccaaaaacatgaaactggctgatgatgtcgacttggagaggatc
gccacagagactcacggccatgtgggcgctgacctggctgctctgtgctcagaagctgct
ctgcaagccatccgcaagaagatgatcctcatagacctggaggacgataccatcgatgcc
gacctgctcaactcactagctgtcaccatggacgacttccagtgggcactgagtcagagc
aacccatcagctttgagagaaactgttgcagaggtacctcatgtcaactgggaggacatc
ggaggactggacgatgtcaagagagaacttcaagaactggttcagtacccagttgagtat
ccagacaagttcctaaagtttgggatgaccccatctcggggagtgttattctatggtcct
ccaggttgtgggaaaactcttctggctaaagccattgccaatgagtgccaggctaacttt
gtctccatcaaaggacctgagatgctcaccatgtggtttggagaatcagaggccaatgtc
agagacgtctttgataaggccaggcaagcagccccctgcatcttgtttttcgacgagttg
gactcaattgccaaatccagagggggcggtggcggggatgcaggtggcgcagctgacaga
gtcattaaccagatactcacagagatggatggcatgtccgacaaaaagaatgttttcatc
ataggcgccacgaacagaccagacatcatagacgcagccatcctgaggccgggccgttta
gatcagctcatctacatcccactcccagacaaacgctctcgctccgccatcctacgcgcc
aacctccgcaagtcccctattgcccgagatgtagaccttgaatacctgtctggtatcaca
gagggtttctctggagccgacctaacagagatctgccagcgggcttgtaagctggccatc
cgtgaggccatcgaggccgagatcaaagctgaacgtcagaggcagagcagaccaggcatc
cccatggatgaggacttcgatccagtcccagagatcaggaaggaccactttgaagaggca
atgcgatttgctcgtcgctctgtcagtgacaatgacattcgtaaatatgagatgtttgct
caaactctgcaacagagccgaggctttgggaacttcaggttcccttcagctactggttca
cagtctgggggtcaaggatcaggttctgggtcagggaggccaggcttgtacagagaggaa
ggcgatgatgacctttatcagtga
DBGET
integrated database retrieval system
