Scomber japonicus (chub mackerel): 128366343
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Entry
128366343 CDS
T09718
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128366343 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sjo03310
]
128366343 (rorc)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
128366343 (rorc)
Nuclear receptors [BR:
sjo03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
128366343 (rorc)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Hydin_ADK
VPS13_M
Motif
Other DBs
NCBI-GeneID:
128366343
NCBI-ProteinID:
XP_053182999
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Position
10:complement(10793716..10812214)
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AA seq
509 aa
AA seq
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MEYAEPDVPPADTPIKKEGVVSKKTHLTQIEVIPCKICGDKSSGVHYGVITCEGCKGFFR
RSQLPTVSYSCSRQSNCQIDRASRNRCQHCRLQKCLAQGMSRDAVKFGRMSKRQRDSLIA
EVERHRQQQQQQQQQQQQLQAEPQSVLSYPIKGRQDRSPQLLQPMASAYSFTGETGLLSY
TTDVHPYLVCSPSESQVSDMIYRSSGVSPTSRSQGRGDNSGHSDGRVFDSRQPPHDLMTI
HPYNPLEDPYSLYPHSLRNIDELCASIVRSHRETCQYRVEELHALRWKLFSREEIQAYQS
KSVDEMWQHCAIRLTDAVQFVVEFAKHIPGFRMLSQNDQIALLKTGSMEVVLVRMSRFFN
TENNTVFFDGKFAGTEVFKSLACGDLIAAVFDFAHAMCALKLTEQQIALFCALVLINADR
PCLEDRGRVQRVQRSVELGLTHILHRDHQQSLMHKLHQRMEVLRSLCSLHMEKLRWFSQR
YPLTAHSMFPPLYKELFASEAELLPGTTH
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggaatatgcggagcccgacgtgcccccagctgacacccccatcaaaaaagaaggagtc
gtgtccaagaagactcatttgacccaaattgaagttatcccatgcaagatctgtggtgat
aaatcctctggagtccattatggagtcatcacttgtgagggctgcaagggattcttccgg
cgtagccagctgcccactgtatcgtactcctgctccaggcagagtaactgtcagatcgac
cgtgcaagtcgtaaccgctgccaacactgtcgtctgcagaagtgcttagcgcagggcatg
agcagagatgcggtgaaatttggacggatgtctaagcgccaacgggactctctgatcgct
gaagtggagagacaccgacagcagcagcagcaacagcagcagcagcaacagcaacttcag
gcagaaccccaatctgtgttgtcctaccccatcaagggccgccaggaccgctccccgcag
cttcttcagcccatggcttcagcctactccttcactggagagactggactgctgtcctac
accactgatgttcacccttatctggtgtgctccccgagcgagtcacaggtgtcagacatg
atctatagaagctctggtgtctctcccacatctagatcccaggggaggggggacaacagt
ggacactctgatggaagagtatttgactccagacagccacctcatgatctgatgacaatt
catccctacaacccactggaggatccttatagcctctatcctcactctctgcgtaatata
gatgagctgtgtgccagcattgtgcgttcccacagagagacctgccagtacagagttgag
gagctgcatgctctcagatggaaactgttcagcagggaggagatccaagcctaccagagc
aaatcagtggatgagatgtggcagcactgtgccattcgactgactgatgccgtgcagttt
gtggtcgagtttgcgaaacacatcccaggtttccgtatgctcagccagaacgaccagatt
gcgcttctgaagactggttctatggaggtggttctggtgaggatgagtcggttctttaac
acagagaacaacaccgtcttctttgatgggaaatttgctggaactgaagtcttcaagtct
ttggcatgtggtgatttaattgcagcagtgtttgactttgctcacgccatgtgtgctttg
aagctcaccgagcagcagattgctctcttctgtgcactggtgctgatcaatgcagatcga
ccatgtctggaagacagaggcagggttcagagagtgcaaagaagtgtggagttagggctc
acacacatcctacaccgagaccaccaacaaagtctaatgcacaagctccaccagaggatg
gaggtgttgcgttcactgtgcagtctgcacatggagaagctgcgctggttcagtcagcgt
tatccactcaccgctcactctatgttccccccactctacaaggagctgtttgcctccgag
gcagagctgctgcccgggaccacccactga
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