Scomber japonicus (chub mackerel): 128366385
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Entry
128366385 CDS
T09718
Symbol
irx1a
Name
(RefSeq) iroquois-class homeodomain protein IRX-1a
KO
K24889
iroquois-class homeodomain protein IRX
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128366385 (irx1a)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
128366385 (irx1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
128366385
NCBI-ProteinID:
XP_053183055
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All DBs
Position
10:16710705..16714928
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AA seq
489 aa
AA seq
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MSFPQLGYPQYLSASQAVYGSDRPGVLTPSSRGGSTEIGGSPSATAAAVTSVLGMYANPY
AHNYSAFLPYTSADLALFSQMGSQYELKDSPGVHPASFAAHTSPAFYPYGQFQYGDPARP
KNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKV
TWGSRSKEDGEDGNLFGSGDEAEKNEDEEEIDLESIDIDKIDDNDGDQSNEDDDDKSTEG
SRDHRGGGGAGGELDTLEKRRAFALQAHEAFDKSKSTLSVHPGSKENSDGNNNNTTRVLS
PDRPGSFPLPSNNKPKIWSLAETATSPDSSSQKPTSPCGPAATTHPSAPHHQIQTHPAFL
PSHGLYTCQIGKFHNWTNGAFLGQNSLLNVRSFLGGVNQHHHHHHKHHLPAQQQPTSVVV
SPVAAAAALSNESKASPETHSPKHIDHENGIRSDSPPTQTLKSSFRPIHDSARSPPDATQ
RVLTALSSA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcccccagctaggctacccgcagtacttaagtgcctcccaggcggtgtacggg
agcgacagaccgggagtgcttacgccttcgtcccggggagggagcaccgaaatcggagga
agtccgtccgctacagcagcggcggtcacgtcggtgttgggcatgtacgccaacccgtac
gcacacaactacagcgctttcttaccatacaccagcgcggacttggctcttttttcacaa
atggggtcacagtatgagctgaaggacagccccggcgtccatcctgccagcttcgctgcc
cacacctctccggccttctatccatacggccagtttcagtacggggacccagccaggccc
aagaacgccactcgggagagcaccagcaccctgaaagcctggctcaacgagcacaggaag
aacccgtacccgaccaagggggagaagatcatgcttgccatcatcaccaaaatgaccctg
acgcaggtctccacatggttcgccaacgccaggagaaggctcaagaaggagaacaaggtg
acctggggtagcaggagcaaagaggacggggaggacgggaacttgttcggcagcggggac
gaggcggagaaaaacgaagacgaggaggagattgatttggagagcatagatatagacaaa
atcgacgataacgacggggatcaaagcaacgaggacgatgacgataaatcaacagaaggg
agcagggaccaccgaggcggaggcggtgcgggtggagagttggacactttggagaaaaga
cgggcctttgcgctacaggcccacgaggcctttgacaaatctaaaagcacactttcagtt
cacccagggagtaaagagaactcggacggcaacaacaacaacaccacacgagttttgtcc
ccagacagacctgggagctttcctctcccgtctaacaataagcctaaaatatggtcttta
gcagagaccgccactagtcccgacagttcatctcagaaacccacgtccccttgtggtcca
gcggccaccactcacccatcagcaccccaccaccagatccagacccacccggccttcctc
cccagtcatggactgtacacttgccagattgggaagttccacaactggacaaatggagct
ttcctgggccagaactccttgctgaacgtgaggtcgtttctgggaggagtaaaccagcac
catcaccatcaccacaagcaccacttgccggcccagcagcagccgacatcagtggtggtg
tcgccggtagcagctgctgcagcacttagcaatgaaagcaaggcctcaccagagacccac
agtcccaagcacatagaccatgaaaacggcataaggtctgattcgcctccaacacagacc
ctgaagtcttcctttcgacccattcatgacagcgccaggagtccaccagacgccacgcaa
cgggtcctcactgctctctcctcggcttga
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integrated database retrieval system
