Scomber japonicus (chub mackerel): 128366453
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Entry
128366453 CDS
T09718
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128366453 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128366453 (cnot3a)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128366453 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128366453 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF6479
Cluap1
DUF5646
DUF4407
Motif
Other DBs
NCBI-GeneID:
128366453
NCBI-ProteinID:
XP_053183139
LinkDB
All DBs
Position
10:complement(9534965..9542542)
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AA seq
912 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEELKRLIERHRFH
IRMLETILRMLDNDSVPVDSIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALV
ATSPSGQGNVEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQS
PVKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGIPVVPPSSSLIGSFSSAVQQHQHQ
PAQQQQQPQPPNQPQQPQQQPPQTKPSAPSNNTPSPPSNPLLPVSTAPPLPTPSTPISLA
PNSQSQPTSGPTPASSLGLGLGLGLSKVGMTGTSSANQMSGLGLGGHHSPLNTMAGLISG
STPAPYAQAAASGGLGLSSTTQSSISVESSTSIPTSGSSGVTTNGAGTGLGLLGSSPAHS
SLSGSIMGLVPGQNVSPVASQVPPSSVSATPGVIGMMGGNGGNVGVVGGVGVNAAPARPP
SGLKQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLPP
SSPSPSFSDSTPGGGSLLNGPHSYTQASEGLKAPEPLSSLKAMAERAALGSGLDGEIPNL
HLRDRGRNDIFSSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESA
WTHMPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGT
KAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFT
FEYRYLEDRDLQ
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaacttcaaggcgagatcgacagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagatatctggcaaaagctccacaatgcagccaatgcaaaccag
aaggaaaagtatgaggctgacctcaagaaagagattaaaaaattacagcgattgagagat
cagataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtagagaat
cgcaaacttatcgagacgcaaatggagcgattcaaagttgtggagcgtgaaacaaaaaca
aaagcatactctaaagagggcttggggctcgctcagaaggttgatccagctcagcgggaa
aaggaggaaacgggacagtggctaacaaatacgatagacactctaaatatgcaggtggat
caatttgaaagtgaggtggagtctctttcagttcagacacgaaagaagaagggtgataaa
gatcagaagcaagatcgtatcgaggagctcaagcggttgattgagaggcatagattccac
atccgcatgttggaaaccattttacgaatgctggacaatgactctgtaccagtggattca
attcagaagatcaaggatgacgttgagtattacattgattcctcccaagaccctgacttt
gaggagaacgagttcctgtatgacgacttagacctggaagatatccccgcagcattagtt
gcgacgtctccgtcaggtcagggcaacgtggaagatgagatgtatctccactccagcagc
actcccacttccaccacctcttcttcacccattcctccatccccggccacttgcactgct
gagaactcagaggacgataagaaaaggggacgatcgacagacagtgaagttagtcagtca
cctgtgaagaacggcaccccttccttgctgtcttccttctcttcctccacaacctctggc
tcctcctcatcctcgtccctcgtgtccatggcgagtgtggtagggggcatccctgtggtt
cccccaagcagcagtcttataggaagcttcagcagtgcggtacagcaacatcagcatcaa
cctgcacaacagcagcaacaacctcaaccaccaaaccaaccgcagcagccacaacagcaa
ccacctcagacaaaaccctctgccccctcaaacaacacccccagcccgcccagcaacccg
cttctcccagtctccacagctccccctctccctacgcccagcacacctatttcattggct
cccaactctcagtctcagcccacatctgggccaacccctgcatccagtttgggacttggg
ttgggactgggtttgagcaaagttggcatgacggggaccagcagtgccaaccaaatgtct
ggtttaggactgggtggccaccactctcctctaaacacaatggcagggctcatttcgggg
tccacacctgccccttacgctcaggcagcagcatcaggaggcttgggtttgagcagcacc
acccagtccagcatttcagtggagagcagcacttcgatccccacctctggctccagtgga
gtcaccaccaatggggcagggactgggctcggattgctaggttccagcccggctcacagt
tctctgagcgggagcatcatgggtctggttccagggcaaaatgtttcccctgtcgcctct
caggtgcctcctagttctgtcagcgctaccccaggagtgattggcatgatgggaggcaac
ggagggaacgtcggagtagttggaggagtaggggtgaatgctgctcctgctagaccgccg
agtggattgaagcaaaatggaagcacaagttacagtgccgtagtggcagagagttccaca
gaatcagctctaagcacaccgagccagtcacaaagcagccaaccatcatctctcagttct
tcaaccagtcagccgatggacaatggtcccagtttaatcagctccatcaccctgcctccc
agctctccgtccccctcattctcagacagcacacccggaggagggagtctactaaacggc
ccccactcctacacgcaggcctctgagggcctcaaggctcctgagcctctcagttcactg
aaggcgatggctgagagggcagcgctgggatcaggcctggacggagagattcccaacctg
cacctaagagacagaggtcggaacgacatcttctcctcatctgcagcgcccggcacaccc
gccgcccctcagccgtccgtgtcggaagtcagcatcccaccctcgctcggggtctgtcca
ttgggcccaacccccctccccaaagaccagctctaccagcaggccatgcaggagtccgcg
tggacacacatgccacacccctccgactctgagaggatcaggcaatacctgatgaggaat
ccgtgtcccaccttgcccttccatcatcagataccgccacaccactctgactccatagag
ttctaccagagactgtctacagaaactctatttttcatcttctactacctggagggcacc
aaggctcagtatctgtctgccaaggctctcaagaagcagtcatggaggtttcacaccaag
tacatgatgtggttccagaggcacgaggagcctaagactatcactgacgagtttgaacag
ggcacttacatttactttgactatgagaaatggggccagcggaaaaaggaggggttcacc
ttcgagtacaggtacctcgaagacagagacctgcagtga
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