Scomber japonicus (chub mackerel): 128366565
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Entry
128366565 CDS
T09718
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128366565 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128366565 (smarcc1a)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128366565 (smarcc1a)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128366565 (smarcc1a)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128366565 (smarcc1a)
PBAF complex
128366565 (smarcc1a)
GBAF(ncBAF) complex
128366565 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
Chromo
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
128366565
NCBI-ProteinID:
XP_053183280
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All DBs
Position
10:29433283..29464283
Genome browser
AA seq
1117 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGGGGGTAVGRKKDGGPSTKFWESSETISQLETVRLWIGK
HYKKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHI
LGSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIDQKQA
SKLKDTIKRHQGSITDDKSKATHHIYPSPSQQEEEEWLRPVLRKDKQVLVHWGLYPDSYD
TWVSVNEVDGDVEDPPSSDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVCFRQRVY
PKEEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEE
EDTEEDMTKDMDDSSAGASMEEGSMSKNDDMEDDSVLSGGKDDEDQGKAEVNRLIDASED
NVTEQTHHIIIPSYSSWFDYNCIHEIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL
NPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSDSRPLPMGPPPTPHFTVLA
DTPSGLMPLNHRPPPIPPPQQMPNFPDKGKDKAMAIDLQNFGLRTDLYNKKKAKAVTSTR
EWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENTESSLGPL
AYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFSRVREEVPAELVEAHVKKV
QEAARSTGKVDPAFGLESSGIAGTAPDEPEKTETTEPEKVDTDTDSQQGDKAELKDEAEK
PSESAEKSDKTETTEKVKKEGAETSEREEESEEGGEAKTTPAEKDKEEAMETSSSDQEKD
KEEKAATEEGEEKRKKLEHDIGEGNIATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQMEQ
QAAAVAAAAAQAQGQGQASGPGPHSGPPPSGMHHGGPPPHHGGPPPHHGAPTPHHGGPPT
GAAMHPGYPPMGHHPMAPHHPGQTGPMGPSQPMPTRMIPGPPSAGPPPGGMPPMMPPRHP
GAPNGMYPGPPPAQPEAVPAVPIVGPPAPTSGRVADN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgactacggcaggcggaacgggctcgggcggaccggctaccggcccg
gtcggtggtggtggaggaaccgcagtgggacgaaaaaaagacggcggaccttctactaaa
ttctgggagagttcagagacgatatcgcagctggagacggtgcggctatggatcggaaag
cactacaagaagtatgtccagaatgactccccctccagtaaatccttggcaggccttgtg
gtccagctgctgcagttccaggaggatgcttttggacgcagggttaacaatcctgctctt
accaaactacctgccaagtgtttcctggatttcaaggctggaggagctctctgtcacatc
ctggggtcggtctacaagtttaagagcgagcagggctggcgtcggttcgacctgcagaat
ccgtcccggatggacaggaacgtggaaatgttcttaaatgtagagaagaatttggtgcag
aataactgcctgactcgacccactgtcttcctgtcgccggacatcgaccagaaacaagcc
agtaagctcaaagacaccatcaaaaggcaccagggctccatcactgatgataaatcaaag
gccacccaccacatttatccctctccatcgcaacaagaagaagaggagtggctgcgtcct
gtcttgagaaaagacaaacaggtgttggtgcactggggtctctacccagacagctacgat
acctgggtatcagtcaacgaggtggatggtgatgtggaggatcctcccagctctgacagg
ccctggaaggtccatgccaagtgggttttagatactgatgccttcaacgagtggatgaat
gaagaagactacgaggtggacgagaacaagaaaccagtctgcttccgccagagagtctac
cccaaggaggaagagtcttcccgtacgcccgatcgcaaggagcgcaaggccaactctgcc
ggcaagaagaggagacgctcgccctcgccgcccagcactcccgccgagtcccgcaagaag
ggaggaaagaaggggaacccggggcctcactggaagcgacggggccacagaggcgaagag
gaggacacggaggaggacatgactaaggacatggacgactcttcggccggtgccagtatg
gaagagggcagcatgtccaaaaatgatgacatggaggacgactctgtgctgtctggtgga
aaggatgacgaggatcagggcaaagctgaagtaaaccgactgatagacgccagcgaagac
aacgtgaccgaacagacgcaccacatcatcatccccagctacagctcttggtttgactac
aactgcatccatgaaattgagagaagagccctgcctgagttcttcaacggaaaaaacaag
tccaaaactccagagatatacctggcgtaccgcaacttcatgatcgacacgtatcggcta
aaccctcaagagtatctcacctccacttcctgccgcaggaacttgaccggagatgtctgc
gctatcatgagggtccatgcattcttggagcaatggggtttggtgaactatcaggttgat
tcagacagtcgcccactgcccatgggccccccacccacaccccacttcacggtgctggct
gacacaccctcaggcctcatgcccctgaaccaccgacctccaccgatcccccctccacag
cagatgcccaacttcccagacaaaggcaaagacaaggccatggccatcgacctgcaaaac
ttcggccttcggactgacctttacaacaagaaaaaggctaaagccgtgacctccaccagg
gaatggaccgagcaggagactctactgctactggaggctcttgagatgttcaaagacgac
tggaacaaagtgtcggagcacgttggttcacgcacccaagacgagtgtatcctgcacttc
ctgcggctccccatcgaagatccatacctggagaacacagagtcctctctgggccctctt
gcctaccagcccatacccttcagccagtctggaaaccccgtcatgagcactgttgccttc
cttgcctctgtggtcgaccccagagtggcttctgctgctgccagggcagccttagaggag
ttctcccgtgtgcgtgaagaggtgccagctgaactggtggaggcccacgtgaaaaaggta
caggaggcagccaggagcacgggcaaggtagaccccgccttcggcctggagagcagcggc
atcgctggcaccgccccagatgagcctgaaaaaacagaaaccacagaaccagaaaaggtg
gacacggacacagactcccagcagggtgacaaggcggagttgaaggacgaggccgagaag
cccagtgagtccgcagagaagagcgacaagacagagaccacggagaaagtaaagaaggaa
ggagcggagacgtcggagcgtgaggaggagagcgaagagggaggagaggcgaagaccact
ccagcagaaaaagacaaggaggaagcaatggagacgtcgtcctcggatcaggagaaagat
aaggaggagaaggcagctacagaggagggagaggagaagaggaagaagctggagcatgac
atcggagagggtaacatcgcaactgcggccgccgctgccctcgcatctgctgccacaaaa
gctaagcacttggcagcggtggaggagaggaagatcaagtccctggtcgctctgctggtg
gagacccagatgaagaagctggagatcaagctgaggcacttcgaagagctcgagaccatc
atggaccgagagaaagaggctttggagcttcagaggcagcagctgctcaccgagcgtcag
gcgttccacatggagcagctcaaatacgccgagatgaaggcgaggcagcagatggagcag
caagctgccgccgttgctgccgccgccgctcaggctcaaggacagggacaggcttcgggt
cctggaccccactcagggcctcctccttcaggcatgcaccacggaggacctccacctcac
cacggaggaccaccacctcaccatggagcacccacgccccaccacggagggcccccaact
ggtgctgccatgcaccctggctaccctccgatgggtcaccaccccatggctcctcaccac
ccaggacagacaggaccaatgggaccaagccagccgatgccaacccgtatgatacctggc
ccgccctctgctggcccccctcctggcggtatgcctcccatgatgcctccacgccaccct
ggagctcccaacggcatgtacccaggcccaccacctgcacagcctgaagcggtacctgca
gttcccattgttggtcctccggcgcctacgagtggacgcgtggctgacaactaa
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