KEGG   Scomber japonicus (chub mackerel): 128366623
Entry
128366623         CDS       T09718                                 
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain
  KO
K06238  collagen type VI alpha
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo04510  Focal adhesion
sjo04512  ECM-receptor interaction
sjo04518  Integrin signaling
sjo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128366623 (col6a4a)
   04518 Integrin signaling
    128366623 (col6a4a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128366623 (col6a4a)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128366623 (col6a4a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128366623 (col6a4a)
   00536 Glycosaminoglycan binding proteins [BR:sjo00536]
    128366623 (col6a4a)
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   128366623 (col6a4a)
Glycosaminoglycan binding proteins [BR:sjo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128366623 (col6a4a)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   128366623 (col6a4a)
SSDB
Motif
Pfam: VWA VWA_2 Collagen Kunitz_BPTI VWA_3 VWA_CoxE vWA_SIBA-E ARC6
Other DBs
NCBI-GeneID: 128366623
NCBI-ProteinID: XP_053183334
LinkDB
Position
10:complement(33807244..33879753)
AA seq 2751 aa
MEGRQGLLLVLIIAACFYGNAAQSTVCTQEAVADIVFLVDGSWSIGSQNFDQIRQFLQTL
VDSFDVGPDRVRIGLVQYSNNVRTEFLLNTYDSKDDILEYIETLPYMGGGTHTGKGLDFM
LKHHFVEAAGSRAAQNVPQIAVVITDGKSQDNVESHAQDLKRKGIVLYAIGIKDADVTQL
KEIANKPHSQHVYSVSDFTALQGISQNIVQTLCTTVDEVKRQLLQLSEECAKATVADIVF
LVDGSSSIGITNFQEVRQFLRSVISGLDIGPDKVRIGLAQYSDEPSQEFLLNEHMDKNSL
LDQVANFPYLTGGTETGKAIDFIRTRYFNDAAGSRVNQRVPQIAVVITDGDSTDDVNGPA
QRLRQHGVIVFGIGVGQANLAQLKSIANKPSHRFMHHINNFQALQELTDDLLQTVCVSVE
DQTQALTERFADIFFLVDSGVTTVNFQQIRATLNRLVNQLNISASAFRIGLAQYGKDTKV
EFLLNAHKTKAETQAATKSFRLRRLQTNEERKLGNALEYARTNFFTSEAGGRADQGYRQF
LVVMSGKNSDDDVYKQSRKLKLEGVTAVAVSLGASMSEMRVVASPSYAFDYTSNLTLILK
AVFEKVEDVTNVTRDCNAANLADIVFIIDESGSIGTPNFQLVRHFLHSIVSGLNVSNNTV
RVGIVTFNDRATAQVYLNTFNDQKELLNFIKILPYRGGGTNTGEALNFTREKIFTEANGS
RKKKGYQQVAVVITDGKSQDNVSTAAADLRRAGVTVYAVGIKDANKIELEEMASYPSHKH
VFIVDRFDKLKALEQSLQKSLCHNILRQAVTINTRRTDIKKGCIQTDEADIFFLIDHSGS
IYPSDFHDMKKFILEFLDTFRIGPDHVRVGVAKYADSPNLEIGLNQYTDVKALEKAVEGI
KQLGGGTETGRALEFMSKYFSTRDHKVPEYLVVITDGKSADEVKVPAEKLRMQGIKIYAI
GVKSADRDELLEISGDPTKMFFVNNFDALTPIKDNIVTDICATDACKDLPGDLLFLIDSS
GSIEAEDYIKMKNFMKSVISKSVIGQDEVHVGVMQYSTVQQVGFTLNQYYSKNDMSNAID
AMRQIGGGTDTGEAITALSQYFTIARGGRPNLRQTLIVITDGESQDEVKSPAAALRAKGV
VIYAIGVVDANTTQLLEISGSQERVYSEKDFDALKDLESEVALELCDPGRDCKKTEKADI
IFLVDGSTSITLEKFRSMLKFMESMVNQTTVGKDLTRFGVIIYSDNPQSVFTLKEYTSKP
QVLNAIKALKSPNGNTYTGRALEYSRQFFSAQNGGRAALQVPQILMVITDGDATDRHSLT
KPSVALRDEGITVFSIGVEGANKTQLEIMAGQDKSRVFYVDNFDALETLYKNITEVLCNS
TKPVCEKQKADLIFLVDQSGSIGPTDYTLMKKFTTELIQNFKVSKDLVHVGLAQFSDTFQ
NEFHLNKYYTEQEVTEHIMKMLQTGGGTKIGLALNYIKEYFTAAKGSRKSAGISQNLVII
TDGESEDDVEDAAEYLRLQLKIEIFAIGIGDVHHLQLHQMTGTPKRVLTVENFGSLEKIK
QKVVDTICTSTNPPDPPSCSIDIAFGFDISLRAGVSELARDHIKLQTFLPEIAHYVSSVQ
GLCCTGTEPINPNIGFRVLSGNSLEDYKFEPYSEGTVTKVMKLNMAEPTSFNTDLLRSFE
EKFRTQSNAGVKVLVIFSDGLDEDVMTLEQESERLRQSGISALLVVALEGVRDPAPLQMV
EFGRGFGYKLPLSIGMPSVGSTILKQIDAVSDKECCGVMCKCSGHEGFRGSRGPPGSKGE
TGQKGYPGFPGEEGVAGDRGGPGPSGPQGVQGCPGLRGMKGNRGLRGNRGAEGDDGLNGV
DGEQGATGADGSRGERGSSGNPGIPGIRGETGLRGDRGLRGDPGEPGRDNTVPGAKGEPG
NPGLPGINGADGRPGESGVVGEPGPDGRRGTLGNKGAPGPPGDPGLTGVPGASGQQGKLG
VRGQPGPRGIPGLPGPQGRPGSPGRAGQTGRRGGTGQKGQPGDPGPQGVPGSLGSRGMPG
QDGKDGYGPAGSKGAKGDPGFPGYPGLSGEYGLEGPKGNPGRKGNIGRGGNSGRSGESGG
KGEPGYSGHRGHKGPPGGKGKTECQLITYIRDNCACSMDRSECPAFPTELVFGLDMSGDV
DNRMFERQRTALLSLLGDITIAESNCPTGARVAVVAYGSHTKHLIRFQDYRRKAQLIEAV
KNIALERSSNQRQLGAAMSFVGQNVFKRTRAGVLMRKVAVFFSSKSVQDNRDIVTAVMEY
RGLNIVPAVISLEASPQVRQALELDDTGASIFTVLGSNNGAELRRVKNCAICYDPCKRAE
ECAFIQESVRPQEVDLDLVMVADSSRLMQADEFAGTQQLLSSVVEQLAVSSQPGRRNNQA
RVAVVQQSGTRTPKLEFGLQTYQDHEQMRQHLITGMQQQGGSSALGQTLDFTLRNVLLRA
SQPRRKKAMLCVVGTQTSYEDQARLQYISQKAKCEGVAMFVVTVGDRYDRKQVEELASQP
VQQHLIHAGRLRADEQGYAQRFFRVFLSTLNKGINKYPPADLKRTCDQLIEQVQGQGQVI
FSGRAEGRRGGRKERRKKEGRKKETDGCDQLVVNVCVLLSAWCQLDADIGIPCAEYVQHW
FFDKAIGACSAFWYGGCGGNANRFKTEHECLRTCGSHHRVVLSRPQPTHFIARDLCSLGQ
DPGSCQNYTMMWFFDTIQSECSRFWYGGCGGNENRFKTQQECENQCVTESR
NT seq 8256 nt   +upstreamnt  +downstreamnt
atggaggggaggcagggtcttctccttgtcctcatcatagcagcgtgtttctatggcaac
gctgctcagagcacagtctgcactcaagaggcagtagctgacatcgtcttcttggtggac
gggtcgtggagcattggcagccagaacttcgaccagatccgtcagtttttgcaaacgctg
gttgacagctttgacgtcgggcctgatcgtgttcgcatcgggctggtccagtacagcaac
aatgtacgcaccgagttcctgctcaacacctacgacagcaaggacgacatcctggaatac
atcgagacattaccttacatgggaggcggcactcatacggggaaaggcttggacttcatg
ctgaaacatcacttcgtggaggccgcgggaagccgggcggcccagaatgtgccgcagatc
gctgtggtgatcacagatggcaaatcgcaagacaacgtggagtcccacgcccaggatctg
aagagaaagggaattgttttgtatgcaattggtattaaagatgcggatgtaacccagctg
aaggagatagcgaacaagccgcacagtcagcatgtctacagtgtgtcagattttacagcg
ctgcagggaatctctcagaacatcgtccagacgttgtgcacaactgtagacgaagtcaaa
cgacaactcttgcagttgtctgaagaatgtgccaaagccacggtggccgacatcgtcttc
ctggtcgacggttcctccagcatcggcatcactaactttcaggaggtccgacagtttctg
cggagtgtgatttcaggcctcgacattggccctgacaaagttcggattggtttggcgcag
tacagtgatgaacctagccaggagttcctgctgaatgaacacatggacaagaattccctc
ctggatcaagtggccaactttccctacctgacaggaggcacagaaacaggcaaggccatc
gacttcattcggacacggtacttcaacgatgctgccgggagccgagtcaaccagcgggtg
cctcagatcgctgtcgtcatcacagatggagactccacagatgatgtaaatggtcccgcc
cagcgtctgaggcagcatggagtcattgtgtttggcatcggggtgggacaagcaaaccta
gcacagctcaagtctattgccaacaagccttcacatcgcttcatgcaccacatcaataac
ttccaggctctccaggagctgactgatgatctgctgcaaactgtgtgtgtctctgtggag
gaccagacacaagccttgactgaaagatttgcagatattttcttcctggtggacagtggc
gtgactacagtaaacttccagcagatcagggctaccctcaaccgactggtcaatcaactg
aacatctctgcctctgctttccgcattggtttggcccagtatggtaaagataccaaagtt
gaatttcttcttaatgcccacaaaactaaagcggagacccaggctgctaccaagagtttc
cgcttgcgcagactgcaaaccaacgaagaacggaagctgggaaatgcattggagtatgcc
aggactaactttttcaccagtgaggcggggggtcgggcggaccaaggctacagacaattc
ctggttgtcatgagtggaaagaactcagatgatgatgtgtataagcagtcacgaaagctc
aaattagaaggagtgacagcggtggcggtgagccttggtgcatcaatgtcggaaatgcgt
gtcgtagccagtccttcttatgcatttgactatactagcaaccttacacttatcttgaag
gctgtgttcgaaaaagtggaagacgtgaccaatgtgactagagattgcaacgcagccaat
ctggcagacattgtgttcatcattgacgagtctggaagcatcggaactcccaacttccag
ctggttcgccatttcctgcattcgattgtgagtggcctgaatgtcagtaataatacggtc
cgagtgggcatcgtaacgtttaatgacagggccacagcacaggtctacctcaacaccttc
aatgaccagaaggaattgctgaatttcatcaaaatcctgccttaccgtggaggtggtacg
aacaccggagaagccctaaacttcacccgggagaagattttcactgaggcgaatggaagt
aggaaaaaaaagggttaccagcaggtggctgtggtgatcacagacggtaaatctcaggac
aacgtgagtacagcagcagctgatctccgtcgagctggtgttactgtttatgcagttgga
attaaagatgccaacaagatagaactggaagagatggcatcttacccctcccataagcat
gtgtttattgtggaccgttttgacaaactgaaagcgctggagcagagcttgcagaaaagt
ctttgccataatatcttgcgccaagcagtcacaatcaatacaagaagaactgacatcaaa
aaaggctgcatacaaacagatgaagcagacatcttcttcctgattgaccattcaggaagc
atttatccctctgacttccatgacatgaagaagttcatcttagagtttcttgatactttc
cgtattggaccagaccatgtccgtgtgggggttgcaaaatatgcagattcgccaaacttg
gaaattggtctgaatcagtacacagatgttaaggcactggagaaagcagtggaaggtatt
aaacaactaggaggtgggacagagacaggaagagcgctggaattcatgagcaaatacttt
agcactcgtgatcacaaagtcccagagtacctggtggtcatcactgatggaaagtccgct
gatgaagtcaaggttcctgcagaaaaactgaggatgcaaggcatcaaaatctacgctatt
ggggtgaaaagtgcagatagagatgagctgctggagatttccggagaccccacgaagatg
ttctttgtcaataattttgatgccttgacacccatcaaggataacattgtcacagacata
tgtgctacagatgcttgcaaagatttaccaggtgacctccttttcttgattgatagctct
gggagcatcgaagcagaagactacattaaaatgaaaaacttcatgaaatctgtgattagc
aagtccgtcatcgggcaggatgaggtgcacgttggtgtaatgcaatacagcacagtgcaa
caagtagggttcaccctcaaccagtactacagcaaaaatgacatgtcaaatgctattgat
gctatgcggcagataggtggaggcacggacacgggtgaagccatcacagcattgtcacag
tatttcactatagctagaggggggcgtcctaacctgaggcagacgctaatagtgataaca
gacggagagtcccaggacgaggtcaaaagccccgctgcagctctgagggccaagggtgtg
gtgatctatgctattggagtggtggacgccaataccacccagctgttggagatcagtggg
tcacaagagagggtctactctgagaaggactttgatgctctgaaggacttggagagcgag
gtggctttggagctctgtgatccaggaagagattgtaagaagacagaaaaagcagacatt
attttcctggtggacggctccacaagcataacactggagaagtttagaagcatgctgaaa
ttcatggagtcaatggtgaaccaaaccacagttggcaaagatctgactcgctttggggtc
attatctactccgacaacccccaatcagtttttactctgaaggagtatacctccaaacca
caggttttaaacgctataaaagcactgaagtccccaaatggaaacacctatactggcagg
gctctggaatactcacgacagttcttcagtgctcaaaatggcggtcgggcagcactgcaa
gtgcctcagattctcatggtaatcacagatggtgatgctactgaccgtcacagtctgact
aagccatctgtggccctgcgagacgaagggatcaccgtcttcagtattggagtggaggga
gccaacaagacccagttggagatcatggctggtcaagacaagtccagagttttctatgtg
gacaatttcgacgccctggaaactctgtacaagaatattactgaagtcctctgtaactcc
accaagccagtctgtgaaaaacagaaggcggacctgatctttctggtcgatcagtctggc
agcattggaccgactgattacacccttatgaagaagttcacgacagaacttatacaaaac
ttcaaagtcagcaaagatttagtgcatgttggacttgcacagttcagcgacactttccag
aatgagtttcatctcaacaaatactacaccgaacaggaggtgactgagcacatcatgaaa
atgctgcaaacaggtggaggcaccaaaattggactggccctgaattacattaaagaatat
ttcacagcagccaaaggcagccgtaagtctgctgggatctcccagaatctagtgataatc
actgatggtgaatcagaagatgatgtggaggatgcagctgaatatctcaggctccagctg
aaaattgagatttttgccatcggcatcggagacgtccatcatctgcagctccatcagatg
actggtactccaaagagggtgttaaccgtggagaacttcggcagcctggaaaagatcaag
caaaaagtggttgacaccatctgcacatccactaacccaccagacccaccttcgtgcagc
atcgatattgcattcggcttcgatatctccctaagagcaggagtttctgagctggccaga
gaccacatcaagctccagaccttcctcccagagattgcccattacgtttcctctgtgcaa
ggtctgtgctgcactggcaccgaacccattaaccctaacattggttttcgagtgttaagc
ggtaattccctggaagattacaagtttgagccttacagtgaggggacggtcaccaaagtc
atgaagttgaatatggcggagcccacttccttcaacactgacctgctgagatccttcgag
gagaagttcaggacccagtccaatgctggcgtgaaggtgctggtcatcttctcagacggg
cttgatgaagacgtgatgacactggagcaggaatcagagcggcttcgacagtctgggatc
agcgctctgctggttgtggctctggaaggagtgcgtgatcctgctccgctgcagatggtg
gagtttgggcgaggtttcggttacaaacttcctctcagcatcggcatgccaagtgtcggc
agcaccatcctcaaacagattgatgcagtgtcagacaaggaatgctgcggcgtcatgtgc
aaatgttcgggacacgaaggcttccgcggctctcgggggccgccagggtcaaagggtgag
actggacagaagggttaccccgggttcccaggagaggagggcgttgccggtgatcgcggc
ggtccaggacccagcggacctcagggtgtgcagggttgtcctggactcagaggaatgaag
ggcaatcgaggcctgagaggaaacaggggagcagaaggagatgacgggctgaacggagtc
gatggagaacagggagcgacgggagcagacggaagcagaggagagagaggaagttcagga
aacccaggtatcccaggtatcagaggagagacggggctgagaggagatcgaggactcaga
ggagatccgggtgaaccaggtcgagataacaccgtaccaggagccaaaggagagccaggg
aatccaggtttaccgggaataaacggagcggacggacggccgggtgagagtggagtcgtt
ggagagccgggtccagatggaaggagaggaacgctcggtaacaagggagctcccggccct
cctggcgatcccggactaacaggcgttccaggtgcttcgggtcaacagggaaagctcggg
gtcagaggtcaacctgggcccagaggaatccctggacttcctggacctcagggtcgacct
ggatcccccggtagagcaggacagaccggccgccgtggtgggaccggacagaagggccaa
ccaggagatccaggacctcagggtgttcccggatcgctgggatccagaggaatgccgggt
caggatggtaaagacggttatgggcctgcaggatccaaaggtgcaaagggagatcctggt
ttccctggttaccccggcttatcaggtgagtacggactggaaggacccaaaggaaacccg
ggacggaaagggaacatcggacgagggggaaactctggccggtctggagaatcaggaggg
aaaggagagccgggatactcaggacatcggggccacaaaggtcctccaggaggcaaaggc
aagactgagtgtcagctgatcacgtacatcagagataactgtgcttgctccatggatcgg
tcagagtgtccggcgttccccactgagctggtgttcggcctggacatgtctggggacgta
gacaaccgcatgttcgagaggcagcgcaccgccctcctctctctgctgggtgacatcacc
atcgctgagagcaactgtccgaccggcgcccgcgtggccgtggtggcatacggcagtcac
actaagcacctgatccgtttccaggactaccgccgcaaagcccaactcatcgaagccgtg
aagaacatcgccctggagcgctcgtccaaccagcgccaactgggagccgcgatgagcttc
gtaggtcagaacgtcttcaaacgcacccgtgcaggagtgttgatgaggaaggtggctgtg
tttttctcctccaaatcggtacaggataatagggacatcgtcaccgccgtcatggagtat
cgtggtttgaacatcgtccctgcggtcatctcactggaggcttctcctcaagttcgtcaa
gcgttggagctggatgacacaggagcctccatcttcacagtgctggggagcaacaacggt
gctgaactgaggagggtcaagaactgtgccatatgttacgacccctgcaaacgtgcagag
gagtgtgccttcatccaggaatcagtgcggcctcaggaagtggatctggacctggtgatg
gtggctgacagctccaggctgatgcaggctgatgagttcgctggcacccagcagctgtta
agctctgtggtggagcagctggctgtgagctcgcagcctggccggcgcaacaaccaggcc
agagtggctgtagtccagcagagcggcactcgcactcccaagttggagtttggcctgcag
acataccaggaccatgagcagatgaggcagcacctgataacgggcatgcagcagcagggc
ggctcctcagcgctgggacagacgctggatttcactctgaggaatgtgctcctgagggcc
agccagccccgcaggaagaaggcaatgctgtgtgtggtgggcacccagacgtcttatgag
gaccaggccagactacaatacatctcccagaaggccaagtgtgagggggtggcgatgttt
gtggtgacggtgggcgaccgctacgaccggaagcaggtggaagagctggccagtcagcct
gtacagcagcacctgatccatgctgggcgactgagggccgacgagcagggctacgcccag
cgcttcttcagggtcttcctctccaccctcaacaagggaataaacaaatatcctcctgct
gatttgaaacggacctgcgatcagctgatagaacaagtacaaggacaaggacaagttatc
ttcagcggcagagctgaaggaaggaggggaggaagaaaggaaagaaggaaaaaggaagga
aggaagaaagaaacagacggctgtgatcagctggtagtaaatgtgtgtgttctgctttca
gcctggtgtcagctggatgctgatatcggcatcccgtgtgcagagtatgtccaacattgg
ttctttgacaaagccatcggtgcatgctcggccttctggtatggtggctgcggcggaaac
gctaaccgctttaaaacggaacatgaatgtttgcggacatgtggctcacatcatcgtgtc
gtcctgtcaaggccgcagccgacccatttcatcgccagagacctgtgctcgctcggccag
gaccccggcagctgtcagaattacaccatgatgtggttctttgacacgattcagagcgaa
tgttcccgtttctggtacggaggctgcggcggaaacgaaaaccgcttcaagacgcagcag
gagtgtgaaaaccagtgtgtgacggagagccgatga

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