Scomber japonicus (chub mackerel): 128366624
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Entry
128366624 CDS
T09718
Name
(RefSeq) DENN domain-containing protein 4B-like
KO
K20163
DENN domain-containing protein 4
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128366624
Membrane trafficking [BR:
sjo04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
128366624
BRITE hierarchy
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
DUF2464
PPR_long
PPR
SPA
COPI_C
Motif
Other DBs
NCBI-GeneID:
128366624
NCBI-ProteinID:
XP_053183335
LinkDB
All DBs
Position
10:33566889..33590740
Genome browser
AA seq
1515 aa
AA seq
DB search
MTEEKCPQLVDYFVVAGLDPAGPWRPLDEDGKSSSSSTSSSSSSSSSSSGRAVEPVTDLA
VIARGLGEEVPEGFTCIERTLGGHSAELSAGLINNPHLYLCYRRGKDKPPILDISVLYEG
KDPLKQGWYVIETTPYSRSASLSSGGAPTAHRVFLMYRRALDSQGLHTLGVTDIALLLPS
KAEVAPHTFCRVDKNLNTGMWGPALYVCYKRAVAKANALVYEASLISRYPEEDLEAFPLP
ESVPVFCLPMGVTVESWPLNTKYQLPVFSTFVLTSACGDKVYGAAIQFYESFPRELLSER
QSVRLGLLSVVDRRPITNRSLQVKKSICVLSHWPFFNVFQKFLTFVYRYSISGPHVLPLE
KHISSFMHNVPFPSPQRPRILVQLSSYDNLLLCQPVSSPLPLSGASFLKLLQNLGPENAC
TLLVAVLTEHKLLLHSLRPDVLTSVSEALVSISFPLRWICPYIPLCPLQMADVLLAPMPF
IVGVHSSYFDLYDPPTDVVCVDLDTNTIFQLEDKKPLSWRSLPRKHGKTLFNTLTNLHKT
LEKICTPGQEEATLEFLLTDYDQIYRRQKQLELEIQEAFLRFMSCLLRGYRSFLLPITQA
PSDTTTDCSSLFNLQGFLKSRDRTQQKFYNQMTRTQMFTQFIEECSFVSDRHACLEFFDE
CVQKVDVEKPEDVRLIDLDETHSGEHTVFIMPPEEPQEADGSECPALYSYETFPTLKTEL
FDRPQDQLRVPAKGSAPSSPAPRRTKQEIKLAQKRAQKYAAVPDMWSKCLLGHCYGLWFI
YLPTFVRAESAKVRALHAAYDVLKHMENRKVVLPDEVCYRILMQLCGQYGQPVLAVRVLL
EMKKAGITPNTITYGYYNKAVLESKWPSTNQGGRLRWAKLRNVLLAVAQFRQPIKRRQKS
GSVGSRGEAMMDPDQKPRPSSALIRQSSWSGLSESSSHESLTGSLVKSNSLNSMKTSDKV
KLSRKTVLRNAGTNGCGDTISSKPPLARRDTSTPPPAPPAGVLVRRSQVCLSTFYKECAE
SADSEPDCSCQPAERDGRPAVSRDSASRNKVVDENYNNVTSPNRGGLAGKLQQLLTPTRH
RVSVRRAASVDDRRPGGGGGGIGRRVSEQRQSRKAQVAETLLKAKERLVNATSESSLSVG
SDLDLTETPSPAYPLRRSWDANQEGVGLEVLMSSCSLCRNCNLLVYDEEIMAGWTSDDSN
LNSSCPYCSASFVPFLNAEICDLGPISSVERSNWNLEDEVESAVRPPSGHEASLRHQCNG
LSEDSSSETSSYSENSRTTTGSSAGGAPQVAVAYLSPLVLRKELESLLENEGEAVLAQPQ
FLDSHSIIFWNLVWYFQRLGLPSNLLQLVRASPLVNQLTQSENSAVRVRLLWDTLTPDTD
QWPPLYILWRIHSGVPMRSHSWRRHNHPFTLAFLEEVLRWVGMNEVHKAVTLFIDTLAKQ
RESPRIQRSLYREFLFLTLAAMGKDHVAAFDKKYKAAYSRLSGTMGREEMRKKRAQPPSP
KAIDCRRSFHPPLEC
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagaaatgtccccagctggtggactactttgtagtggcaggtctggaccct
gcggggccctggaggcccctggacgaggatggcaagtcttcctcctcttcgacgtcctcc
tcatcttcctcctcctcctcttcgtcgggccgggcggtggagccggtgacggacctggct
gtgatcgcccgggggctcggggaggaagtgccggagggcttcacctgcatcgagagaacg
ctgggaggacactctgccgagctgagcgccggactcatcaacaacccgcatctgtacctg
tgctaccggagagggaaagacaagccgcccatcctggacatcagcgttctgtatgagggg
aaggatcctctgaaacagggctggtacgtcatcgagacgactccgtacagtcgctcggcc
agcctgagctccggcggcgctcccacggctcaccgcgtgttcctgatgtaccggcgagcg
ctggactctcagggcctccacacgctgggagtcacagacatcgctctgctgctgcccagc
aaggccgaggtcgctccacacacattctgccgcgtcgacaagaacctgaacaccggcatg
tggggtccagctctgtacgtgtgctacaagagagccgtggccaaagccaacgctctggtg
tacgaggccagtctgatcagccggtacccagaggaagacctggaggcgtttcctctgccg
gagtcggtgccggtcttctgcctgccgatgggtgtcactgtggagagctggcctctgaac
actaaataccagctgcccgtcttctccaccttcgtcctcacctccgcctgcggggacaag
gtgtacggagcagccatccagttctacgagtcgttcccccgggagctgctgtcagagcgt
cagagtgtgaggctgggtctgctgagcgtggtggaccggcggcccatcactaaccgcagc
ctgcaggtgaagaagagcatctgtgtcctctctcactggcccttcttcaacgtcttccag
aagttcctcaccttcgtctacagatactccatctctggcccccacgtgctgcccctcgag
aaacacatctccagcttcatgcacaacgtcccgtttccttctccacagcggccgcgcatc
ctcgttcagctctcttcgtatgacaacctgctgctctgccagccggtctcctctcctctt
cctctcagtggagcgagcttcttgaagctgctgcagaacctgggcccagagaacgcctgc
acgctgctggttgccgtcctcaccgaacacaaactgctgctgcactcgctgcgacccgac
gtgctgacctccgtcagcgaggcgctcgtctccatcagtttccctctgcgttggatctgt
ccctacatccctctgtgtccgctgcagatggccgacgtgcttcttgcaccgatgccgttc
atcgttggcgtccactccagctactttgacctgtacgatcccccgacagacgtggtgtgt
gtcgacctggacaccaacaccatcttccagttggaggataagaagccgttgtcgtggcga
tcattacccagaaagcacggcaagactctgttcaacaccctcacaaacctccacaagact
ctggagaagatttgcactcccggccaggaggaggcgacgctggagttcctgctgacggac
tacgatcagatctacaggcgtcagaagcagctggagctggagatccaggaggcgttcctg
cggttcatgagctgcctgctgcgaggataccgatccttcctgctgcccatcacacaggct
ccgtcagacaccaccaccgactgcagctccctgttcaacctgcagggcttcctgaagtct
cgggatcgaacgcagcagaagttctacaaccagatgacgaggactcagatgttcacccag
ttcattgaggagtgctccttcgttagcgaccgacacgcctgcctcgagttcttcgacgag
tgcgtccaaaaggtggacgtggagaagcctgaggacgtgaggctgattgacctggatgag
actcacagcggagaacacaccgtcttcatcatgcctcccgaagagccgcaggaagctgac
ggctccgagtgccccgccctctacagttatgaaaccttcccgacgctaaagacggagctg
tttgaccgtcctcaggatcagctccgcgtcccggctaaaggcagcgctcccagtagcccc
gccccccgacgcaccaaacaggagataaagttggcccagaagcgagctcagaagtacgca
gcggtaccagacatgtggtctaagtgtctgctgggtcactgctacgggctctggttcatc
tacctgcccaccttcgtccgggccgagagcgctaaggtccgagccctgcacgctgcttac
gatgtcctcaaacacatggagaaccgcaaggtggtgctgccggacgaggtgtgttacagg
atcctcatgcagctgtgtggtcagtacggtcagccggttctcgctgttcgagtcttgctg
gagatgaagaaggcgggaatcacaccaaacaccatcacctacggatactacaacaaggcg
gtgctggagagcaagtggccctccaccaatcagggcgggcgtctccgctgggccaagctg
aggaatgtcctattggccgtggctcagttcagacagccaatcaaacggcggcagaagagc
ggctctgtggggtcgcggggagaagcgatgatggacccggatcagaagccccgcccctcc
tccgctctgattcgtcagtccagctggagcgggctgagtgaaagctccagtcacgagtct
ctgacgggatcgctggtgaagagcaacagtctgaacagcatgaagaccagcgacaaggtc
aaactcagcaggaagaccgtcctccgtaacgccgggaccaacggctgcggagacaccatc
tccagcaaacctcctctggctcgcagagacacctccaccccacctccagcgccccctgct
ggtgtgctcgttcggaggagtcaggtctgcctctccaccttctacaaagagtgtgcagag
tcggccgactcggagcccgactgcagctgccagcctgcagagagagatggcagacctgcg
gtgtcacgtgactcggccagcagaaacaaagttgtggacgagaactacaacaacgtcacc
tccccgaaccgaggaggcctggcggggaaactgcagcagctcctcaccccgacccgacat
cgtgtgtctgtccgacgggccgcgagcgtggatgaccggcggccgggaggaggaggagga
gggataggacgaagggtgtctgagcagaggcagtcgaggaaagctcaagtggctgaaact
ctgctgaaagccaaggagaggctggtcaacgctacctcagagagttcgttgtctgtagga
agtgacctcgacttgacagagacgcccagtccagcgtaccctctgcgcaggtcctgggac
gccaaccaggagggggtggggctcgaggtgttgatgtccagctgctctctgtgtcgtaac
tgtaacttgttggtttatgacgaggagatcatggccggctggacgtcagacgactccaac
ctgaactcgtcgtgtccgtactgctccgcctccttcgtcccgttcctcaacgctgagatc
tgtgacctcggacccatcagcagtgtagagcgcagtaactggaacctggaggacgaggtg
gagagcgcagtgaggccccctagtggtcatgaggcgtcgctgcgacaccagtgtaacggc
ctgagcgaggactccagctctgaaaccagcagctactcggagaacagcagaaccaccacg
ggctcgtcggcgggcggcgctcctcaggtggcggtggcctacctgagccctctggttctg
aggaaggagctggagagtctgctggagaacgagggcgaggcggtgctggctcagcctcag
ttcttggacagtcactccatcatcttctggaacctggtgtggtacttccagcgcctcggt
ctgccaagcaacctgctgcagctggtccgcgcctcgccgctcgtcaaccagctcacacag
tcagagaactctgcagtcagagtcagactcctgtgggacacgctgactccagacacggac
cagtggccccccctctacatcctctggaggatccacagtggcgtccccatgaggagccac
agctggcggagacacaaccacccgttcacgctggccttcctggaggaagtgctgcggtgg
gtcggcatgaacgaggtgcacaaagccgtcacgctcttcatcgacacgctggccaaacag
cgggaatctcccaggatacagaggagtttatacagagagttcctcttcctcacgctggca
gctatgggcaaagatcacgttgctgcgttcgataagaagtacaaggcggcgtactctcgt
ctcagcggtacgatgggtcgcgaggagatgcgtaagaaacgagctcagcctccgagcccc
aaagccatcgactgcagacgcagcttccacccgccgctcgagtgctga
DBGET
integrated database retrieval system
