Scomber japonicus (chub mackerel): 128366643
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Entry
128366643 CDS
T09718
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sjo03009
]
128366643 (dcaf13)
04121 Ubiquitin system [BR:
sjo04121
]
128366643 (dcaf13)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
90S particles
Other 90S particles
128366643 (dcaf13)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
128366643 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
ANAPC4_WD40
eIF2A
Beta-prop_IFT140_1st
KNTC1_N
MIOS_WD40
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_DCAF12
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
128366643
NCBI-ProteinID:
XP_053183352
LinkDB
All DBs
Position
10:21749646..21760990
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AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETKLDIQRVPRNYDPTLHPFEVGREYTRALNATKLERVFAKPFLA
SLDGHRDGVNCMAKHSKSLSTLLSGSCDGEVKVWNLSTHECVHTLQAHEGFVRGMVVRYC
GTSFFTVGDDKTIKQWKMEAPAYGEEEEPLNTILGKTVFTGLDHHQKDGVFATCGQQVDI
WDEQRTSPIRSFSWGVDSVSSVSFNPVETELLASCASDRSIVLYDMRESAPLKKVIMTMR
SNTLCWNPMEAYYFTSSNEDYNLYTYDMRYLNRPVTVHMDHVSAVLDVDYSPTGREFVSA
SFDKTIRIFPKDGGHSREVYHTKRMQHVICIKWSADNKYILSGSDEMNIRLWKANAAEKL
GVLSPRERVATNYSQKLKEKFQHHPQVRRIARHRHLPKNIFHQTKELRVMKEARRRKERN
VRKHSRPGSMPVVSEKEKHVVTVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcaaagtcctctcgaggaacccggacgactatgtccgagagaccaaactagat
atacagcgcgtccctagaaactatgacccaacccttcatccgtttgaggtgggtagagag
tacacccgggctttgaatgccactaaattggagagggtgttcgctaagcctttcttggcc
tccctggatgggcacagagatggagtcaactgcatggccaagcacagcaagagcctctcc
actctgctgtctggctcctgcgatggagaggtgaaagtgtggaatctgagcacacacgag
tgtgtccacacgctccaagcacatgaaggttttgtccggggaatggtcgtccgctactgt
ggaacatccttcttcacggttggtgatgacaaaactatcaaacaatggaaaatggaggca
ccggcttatggagaggaagaggagccacttaacacaattctgggcaagacagtcttcaca
gggctcgaccatcaccagaaagacggtgtgtttgcaacatgcggccagcaggtggacatc
tgggacgagcagaggaccagccccatccgctctttcagctggggtgtagacagcgtcagc
tctgtcagcttcaacccagtggagactgaacttctggcaagctgcgcctctgacagaagt
atagtgctgtatgatatgagagaatcagcaccacttaaaaaggttatcatgacaatgagg
agcaacacattatgctggaacccgatggaagcctattacttcacatcttcaaatgaagac
tataacctctacacatacgacatgaggtacctgaaccggccagtcacagtgcacatggac
catgtgtctgcagtgcttgatgtggactactctcccactggcagggagtttgtatcggcc
agttttgacaagaccattcgcatcttccccaaggacggtggccacagcagggaagtgtac
cacaccaaacgcatgcagcacgtcatctgcataaagtggtcagcagataacaagtacatc
ctgagcggttctgatgaaatgaatatccgattgtggaaagccaacgcagccgagaaactg
ggagtgctttcccccagagagagggtagccaccaactacagtcagaagctgaaggagaag
ttccagcaccacccgcaggtccgacgcatcgctcgccacagacatctacccaagaacatc
ttccaccagaccaaggagctgagggttatgaaggaggctcgccgtagaaaggagaggaac
gtccgcaagcacagcagaccgggaagcatgccggtggtgtccgaaaaggagaagcatgtc
gtgactgtggttaaataa
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