Scomber japonicus (chub mackerel): 128366688
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Entry
128366688 CDS
T09718
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128366688 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128366688 (cnot10)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128366688 (cnot10)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_14
TPR_7
ARM_TT21
TPR_8
ANAPC3
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
128366688
NCBI-ProteinID:
XP_053183421
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Position
10:28120784..28132535
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AA seq
741 aa
AA seq
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MADSTEQNETKHDSSSSPGMTDQEKEMAASAYEAFSTGKYDDSLKHLEALQELNKEDYKI
AMNKSVVEFYKSGQTTTGNLKQTLMAMKNQVHTSSEDVDGLDDVENCLLYYNQAIIHYHM
RQYSEAISIGEKLYQFLEPFEEKFAQAVCFLLVDLYLLTFQAEKALHLLAVLDKLSVQGS
NKNGKGENNSSNKDGANQRAEFTALIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVMNT
AGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPIKTGECVRCMFWNNLGCIHFA
MGKHNLGIFYFKKALQENDHTCAQLGDGSNGQSKKFTGIPMCALLANKRYELLYNCGIQL
LHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCISANKGGSEQESKGLPCKKGIVQSIV
GQGYHRKIVLASQSTQNTIYSEGQSAAIPVASMEFAAICLRNALLLLPEHQQQDMKTENG
SKSSSQSGSTESGSENSDACSGKGQEADKFLSAAPSSPLRKQEVENLRCSILACSAYVAL
ALGDNLMALNHAEKLLHQTKVSGSLKFLGHLYAAEALISLDRISDAIAHLNPENVSDVSM
GVLTSEQDQGSDKGDEPVESSGKQTPLCYPSSVTSARAMMLFNLGSAYCLRSEYDKARKC
LHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPAAVQRVSPDSRKKPV
QPFQSAQPIQLPSSFTQVQRK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagtacagaacaaaatgagacaaagcatgacagctcatcctcccctggaatg
acagaccaagagaaagaaatggcagccagtgcatatgaagcgttttcaacggggaagtat
gacgactctctgaaacaccttgaagccctgcaggagctgaacaaagaagactacaagatc
gccatgaataaatctgttgtcgagttttacaaaagcggtcagactaccacagggaacctg
aagcagactctaatggcaatgaagaaccaggttcacacatcatcagaggacgttgatggg
ttggatgatgttgaaaattgtttgctgtattataatcaagccatcatccactatcatatg
cgtcagtactctgaagccatctccattggagagaagctctaccagtttctggaaccattt
gaagagaagtttgctcaggccgtgtgtttcctgctggtggatctctacttactcaccttc
caggcagagaaagctcttcatctgctggctgtgctggacaaactgtctgtgcagggaagc
aacaagaacggcaaaggagagaacaatagctcaaacaaagatggagcaaaccagcgagca
gagttcacagcattgatcgaagcagctaaatcaaagatgcaccagtacaaagtgagagcc
tacatccagatgaagtcctccaaagcctgtaaaagggagatcaagtcagtgatgaacaca
gcaggaaattctgcaccctcactcttccttaagagtaactttgagtacctgagaggaaac
taccgaaaagcagtgaagctgctgaacagctccaacattgcagagcatcctggacccatc
aagacaggtgaatgtgttcgctgtatgttctggaacaatctgggctgcattcactttgca
atggggaaacataatctaggcattttctacttcaagaaggcactgcaagagaacgaccac
acatgtgcacaactgggagacggcagcaacgggcaatctaagaagttcacaggtatcccc
atgtgtgctctactagccaacaagcgctatgagctgctgtataactgtggcattcagctg
ctgcacattggcaggcctctggcagcatttgagtgtctgatggaggcggtgcaggtctat
cactccaaccctcgactgtggctacggctggcagagtgctgcatctctgctaacaagggg
ggttcagagcaggagagcaaaggtttaccttgtaaaaaaggtatagttcagtctattgtc
gggcagggctaccatcgcaagattgtcctggcatcacagtctacccagaataccatctac
agtgaaggccagtcagcagctatcccagtagccagtatggagtttgcagccatctgcctg
aggaatgctctgctgctgctgcctgaacaccagcagcaggacatgaagacagaaaacggc
tccaagagctccagccaatcaggaagcacagagagcggcagcgagaacagtgacgcatgc
agtgggaaaggtcaggaggcagataagttcttgtctgcagctccatcgtctcctctcaga
aaacaggaggtagaaaacctcagatgctccatcctggcctgtagtgcctatgtggcatta
gcactgggagacaacctgatggctctaaaccatgctgagaaactgctccatcaaaccaag
gtttcaggatccctcaagttcctgggtcacctctatgctgctgaagccctcatctcattg
gacaggatctctgatgctattgctcacctcaacccagagaatgtcagcgatgtgtcaatg
ggggtgctgaccagcgagcaagaccaagggtctgataaaggagatgagcctgtcgagtcc
tcagggaagcagacccccctgtgttaccctagcagtgtgacatcagctcgggccatgatg
ctcttcaacctgggcagcgcatactgtttgaggagcgaatatgacaaggcccgaaagtgc
ctgcatcaggctgcgtctatggtaaacaccaaggagattccccctgaagccatcctactg
ggagtctacttggagctgcagaacggaaacacccagctggctctgcagatcatcaaacgg
aaccagcttctgcccgctgcggtccagagggtctccccagactcaagaaagaaacccgtc
cagccattccagtctgcccaacccatccagctaccctcatccttcacacaagtgcaacgc
aaatga
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