Scomber japonicus (chub mackerel): 128366760
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Entry
128366760 CDS
T09718
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128366760
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128366760
NCBI-ProteinID:
XP_053183502
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All DBs
Position
2:35533961..35549817
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AA seq
1394 aa
AA seq
DB search
MFKTLKFPTLSFSRGRIMLNASSYTNSDLSLSAGGSGRRVASGGSSSTSSSVLITSSSSH
GTSSGGGIGVSTRGSSSAVSSGGGSSAGSGGGLAGAGAGAGAGFRAGGGSSSMSSGFLCT
GIEERGREGLGAVTVSTVTKTSYSSGGGGGSGEVKRGSSSTRTHSPSPRERKGMSTKATA
FSEVFDESSSANSSPEYNRKEYGVSSAISTSTTRGRSHSRESEIRARLQSASPSASWTEL
DDVKRLLRGNASTSSSPPQSPNNTLPIPKKASVETRTMSESSSTDHYGSIWSGGVNSSYG
YNTNNLSTISTVYPSGVQNNLTLSSPSANSGLSVGGTVPVYGVQNNLVSTSSAVFSPTGT
TAPIVYGVQKNVSSTGISTTTVRPSSPTIEEASGKDFKFVLIEKENAPVKKETERLVMTK
DTGKQFMSAAPSAFAASYSEDSLKREKQKQSASTLDQGTDTKFETVKVATKDKATYAEIR
KDESGFGFCSCCSWWKWLLGLLLSLLLLFGLLFGLIALGEEVKRLKKRVDALETITGTSS
ARSSRLSASSGINIIDPLDSSYIDRSSSGPTLTHSDNGIGLGASGPGARSGQDGVALQRT
VQQLVRAELNSDALRDTLVYSLKGAKGDPGTKGDPGALGQKGDNGFPGVPGPPGQMGHPG
IDGPRGPKGTAGEQGTEGPQGQRGREGPMGPRGELGPPGFGEKGDKGSQGEPGRPGLAGA
PGPVGPKGAMGEHGASGNPGAPGSKGFPGEAGTPGAKGDRGTPGLPGIKGDHGERGPRGL
AGEPGQSGPPGSAGQKGSKGIGGETGPMGPPGVRGPPGVPGDIGPPGTPGIQGPPGIAGI
PGQPGSKGEPGSPGKVIAPTGSNTLTVPGPPGPAGPAGPAGIPGLSGPIGPAGVPGSPGE
QGEKGEQGEKGEKGGQGKPGEPGSETLSATRMSGPPGPPGPPGPPGAPGPQGETKQGPPG
RRGPPGEPGVGVPGSPGQKGEPGSFVPTSETFFAGPPGPPGPPGKQGEQGQQGYPGEPGQ
PGLPGSPGEEGIGFPGQPGSRGSPGPQGREGPRGPQGDPGVSTGGSSRPALPGPPGPPGP
PGVPGRDGSGSESTDVGQYIAEYIQNGNIRQYLVGPPGPPGPVGAPGVPGSSENGQVDDV
ANRVIAFIQREDVRRYVAGPPGPPGPPAAPSQNSYEFTTQEVAEHVLGLMNERGMVGLPG
PPGPPGPPGNSLSTGYQAQGPPGVPGRPGPAGPPGPAGPPGTVLGNYVNADIQDYLQSVA
FRGPPGPPGPPGPEGPPGPIRGLLSYTEHGNRELLNAERQDYVKTHGVLHDIMRQYNSHV
SQGPPGPPGPQGPPGYSRLFGSQDNVTDLVEYIKTYGAIAGPPGRPGQKGDTGFPGPKGE
RDITLTRRRRRSVV
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaacgctcaaatttccgacgctgtccttttcacgtggacgcatcatgctcaat
gcttcgtcctacacgaatagtgatctttctctgagtgccggtgggtcaggtagaagagtt
gcatcaggaggctctagcagcacaagcagctcagttctgatcacatcgagcagctctcat
ggcaccagctctggtggaggcattggcgtctccactagaggatcctcctcggctgtatcc
tcaggtggagggagctcagcaggttccggaggtggcctggcaggggcaggggctggggct
ggggcaggttttagggctggaggggggtcctcaagcatgtcctctgggtttctctgtact
ggtattgaagaaaggggaagagagggtctgggtgctgtgacagtttccacagtgaccaag
accagctacagctcaggaggaggaggaggatctggggaagtgaaaagaggatcgtcctcc
acgcgcactcattcacctagtccaagggagaggaagggcatgtccaccaaggctacagct
ttctcagaggtctttgatgaaagttcaagcgcaaactcttctccagagtacaacaggaag
gagtatggcgtttcaagtgcaatttcaacttctaccaccagagggagaagtcatagcaga
gagagtgagatcagagccagacttcagagtgcttctccatcagcaagttggacggagctg
gatgacgtaaagcgtctgcttagaggaaatgcctccaccagcagcagcccccctcagtcc
cctaacaacacactacctatccccaagaaggccagcgtggaaaccaggaccatgtctgag
agctccagcacagaccactatggcagcatttggtctggaggtgtgaacagtagctatggt
tacaacacgaacaacctgtccactatctcaactgtctacccatcaggagttcagaacaac
ctgacactcagctccccctctgcgaacagcggactgtctgtcggtggcaccgtcccagtg
tatggtgttcagaataaccttgtcagtaccagttctgctgtcttctctcctactggaacc
actgcaccaatagtttatggtgtgcagaaaaatgtctccagcactggaattagcaccacc
acagtgagacccagcagtcccaccattgaagaggcatcaggaaaagactttaagtttgtc
ctgatcgagaaggagaacgctcctgtcaagaaggagacagagcggctggtcatgaccaaa
gacacgggaaagcagttcatgtctgctgcaccttctgcttttgctgcttcctactctgaa
gactcacttaagagagagaaacagaagcaatcagccagcacattggaccaaggaacagat
accaaatttgaaactgtgaaagttgctacaaaagacaaagccacctatgcagagatccgt
aaagatgaatccggctttggcttctgctcctgctgcagctggtggaagtggctcctgggc
ctcctgctcagcctgctcctcctctttggtctcctctttggactcatagctttgggtgaa
gaagtgaaacgtctcaagaagcgcgttgatgctctggaaaccatcactggcacttcatca
gctcgctccagtcgcctctctgcttcctctggcatcaacatcattgacccactggactca
tcgtacattgacaggagctcttctggacccaccctgacccactctgataatggcatcggc
ctgggggccagtgggcctggggccagatcaggacaagacggtgttgccctgcagagaact
gttcaacagctggtcagggctgaactcaactcggatgctttaagagacacacttgtatac
tcactgaaaggggcaaaaggagatccaggaactaaaggtgatccaggggcacttggacaa
aaaggtgataatggtttccctggtgtgccaggtcctcctgggcagatgggtcacccagga
atagatggtccaagaggtccaaagggaactgcaggcgaacaaggaactgagggaccacaa
ggccagaggggccgggagggaccaatgggcccccgtggagagcttggaccacctggtttt
ggagagaaaggagacaaaggatcacaaggtgagccaggacgtcctggtcttgctggtgct
cctggacctgtggggccaaaaggtgcaatgggagagcacggtgcctcaggaaaccctggt
gcacctggttcaaagggtttcccaggtgaagcaggaactccaggagcaaaaggtgacaga
ggaacaccaggcctgccaggaatcaaaggagatcatggagagaggggaccacgtggactg
gcaggtgaaccaggacaatctggaccaccaggctccgctggacaaaagggatctaaagga
attggaggggaaaccggtccaatgggacctcctggtgtaagaggaccacctggggttcct
ggagatattggccccccaggtactcctgggattcaaggacccccaggtattgctggaatt
ccaggacaacccggttctaaaggtgaaccaggatcacctggcaaagtcatcgctccaact
ggttccaatactttgaccgtccccggaccacctgggccagctgggcctgcaggtcctgct
ggaatccctggtttgtctggtcccattggccctgctggtgtcccaggatcacctggagaa
caaggagagaaaggagaacaaggagaaaagggggagaagggaggacaaggaaaacccggc
gagcctggttcagaaactctcagtgcaactcgaatgtctggacctcctggcccaccagga
cctccagggcctcctggagcacctggtcctcaaggtgagactaaacaaggtcccccagga
cgaagaggtcctcctggtgagccaggtgttggggtaccaggatccccaggacagaaagga
gaacctggcagctttgtgcctacctcagaaaccttctttgctggaccaccaggacctcct
ggaccccctggcaagcaaggtgagcaaggacaacaaggttacccaggtgaaccaggtcaa
ccaggtcttccgggaagtccaggggaagagggtattggctttccaggtcagcctggatct
agggggtcccctggacctcagggccgagaaggcccaagaggccctcagggtgatcctgga
gtctcaactggtggatcatctagacctgctctcccaggacccccgggccctcctggacca
cctggtgtacctggtagagatgggagtgggtctgaatcaactgatgtgggccagtacatt
gcagagtacattcagaatggcaacatcaggcagtacctggttgggcctcctgggcctcca
ggtcctgtgggggctcctggggttccaggatcctcagagaacgggcaggtggacgatgtg
gccaacagagtcattgccttcatccagagagaggacgtgaggagatacgttgctggtcct
ccaggtccaccaggacctcctgcagctccaagccagaacagctacgaattcactacacag
gaagtggctgaacatgtccttggtctgatgaatgagagggggatggtaggtcttcctgga
cctcctgggcctcctggaccccctggaaactcattatcaactgggtatcaggctcagggg
cctcctggtgtccctggtcgacctggaccagcaggtccccctggaccagcaggtccacct
ggcacagtacttgggaactatgttaacgcagacattcaagactacctgcaaagtgttgct
tttagaggccctccagggccccctggtcccccaggacctgagggcccccctggtccaatc
cgtggactgctgtcttatactgagcatggcaacagagagttgctcaatgctgaacgacag
gattatgtcaagacacatggtgtgctgcacgacattatgaggcagtacaacagccacgtc
tcccaaggacccccaggaccacctggccctcaaggcccccccggatatagccgattgttt
ggctctcaagataatgtcacagatttagtggaatacataaaaacatatggagccattgca
ggaccacctgggagaccaggacagaaaggagacacaggattcccaggaccaaagggagag
agagacatcacactgacgaggaggaggaggaggagtgttgtgtga
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