Scomber japonicus (chub mackerel): 128366895
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Entry
128366895 CDS
T09718
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128366895 (prdm1a)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
128366895 (prdm1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
Zf-C2H2_ZNF451_C
C2CH-3rd_BIRD-IDD
zf-C2H2_6
zf-C2H2_jaz
FOG1-like_PR
zf-met
zf-C2HE
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
128366895
NCBI-ProteinID:
XP_053183634
LinkDB
All DBs
Position
10:30813953..30902091
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AA seq
932 aa
AA seq
DB search
MAKRLNTALSSSAKKLGKLDPNPSVQSRAVPRGLLCVRVDVYLRRSKDVRDQRERRKGAW
PCGTAGLPQETVPEETSPATNPVVRELMTGLTGQATSHSSAMLTSEGAHTMEQDDTQHGV
KMASAATIATTTAGASSDGAETMTDTDVDMEMEEADMTRWTEEDFEEKCTYIVKDTPWEA
GPDSDAMATTTTTRAEASLPRNLAFKHPAESKEVVGVCSREYIPKGTRFGPLVGEIYTAD
SVPKDANRKYFWRIYEDREFHHFVDGLDETRSNWMRYVNPAHSEAEQNLAACQNGMEIYF
YTVKPVPAGAELLVWYCHDFARRLHYPPSGELMMQKLKQSLLEVKQQQVSSEERVVEASS
PSPISVTPTPPKREHSVLSILRGTNSTSSSSSKREPSRPLPTRPRCADSPERPLYPRAIY
PALRTHPHAPEDFLSHKPGQLGYPRSPGNQSSATPSPSARSSPDSSPQGSPSGPVPSPAS
FYPTGLSPYPGYSPPSAPLSSPFYPPGAPYPRYLLPHHYPLPGGSVLPRMYPLYSNLLPH
HMPLLPADTAGLRFLMSDPHHPSSVSAHRDFLFPGPTSAFSAATSLKDKAGPHHPYPGLP
HPHGSAHAPSSGSPTAGTAPPSERIPTKPTSAMLGNTGEHHSDEEAINLSKVKRGVGSAG
YKALPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHL
QKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYHCKLCPAKFTQFVHLKLHK
RLHSRERPHKCAHCHRHYIHLCSLRLHLKGYCLAANSGPSTSAAMEEMQRANEEIERFDV
SEHAEQLEQLQGGVEVEAMLEKQVLGMLWREADLEPSHYHSRHKSSASELLSVGYGVYES
PNETSVIKMRRSSPITPLPANVTVKQESEDHA
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcggctgaacacagctctgtcttcgtcggcgaaaaaacttggaaaactggac
cctaacccctcagtacagagccgagcagttcccagaggacttctatgtgtcagagtggac
gtctacctgcgcaggtctaaagacgtcagagatcaaagggagagacgaaagggggcgtgg
ccttgtggcaccgccgggttgccgcaggagacagtccctgaggaaacgtcgccggcgaca
aaccctgttgtcagagaattaatgacagggttgacgggccaggcgacctctcatagctcg
gccatgttgaccagtgagggggcgcacaccatggagcaggacgacacacaacatggagtg
aaaatggcctccgccgccaccatcgccacgacgacagccggtgccagctcggacggagcg
gagacgatgacagacacggacgtagatatggagatggaggaggcggacatgacgcgatgg
acagaggaagactttgaggagaagtgcacgtacattgtcaaagacacaccgtgggaggcg
gggccagacagtgacgccatggcaacaacgacaacaaccagagcagaggcgtctttgccc
agaaacctggcgttcaagcacccagctgagagcaaagaggtggtcggcgtgtgcagcagg
gaatacatccccaagggaactcgcttcggtcccctggtgggcgagatctacacagccgac
agcgtccccaaggatgccaaccggaagtacttttggagaatctacgaggacagagagttc
caccacttcgtcgacggcctggatgagacccgctctaactggatgcggtacgtgaaccct
gcccactcggaggcagagcagaacctggccgcttgtcagaatggcatggagatttacttc
tacacggtgaagcccgtcccagccggcgccgagctgctcgtgtggtactgtcacgacttc
gcccgacgcctccactacccgccgtccggagagctgatgatgcagaaactcaagcagtct
ctcctggaggtcaagcagcagcaggtgagcagtgaggagcgtgtggtggaagcctccagt
ccgtcccccatctcggtgacccccaccccacccaagagggaacacagcgtcctctcaatc
ctgcgcggcaccaacagcacctcttcctcctcctccaagcgggagccgagccggccgctt
cccacccgcccccgctgcgccgacagccccgagcgcccattgtacccccgcgccatctac
ccggctctcaggacccaccctcacgcccccgaagacttcctcagccacaagcctggccag
ctcggttaccctcgttcccctggcaaccagtcctcggctacaccaagcccgtcggcgagg
agcagcccagacagcagccctcaaggaagcccctctggaccggtgccgtcccctgcatct
ttctaccccactggactgagtccctaccccggttactccccgccttctgcacccctctca
tcacccttctaccctccaggagccccttacccgcgttacctcctgccccatcattaccct
ctgcccggcggtagcgtcctccccaggatgtaccccctctacagcaacctcctgccccat
cacatgcccctcctgcccgccgacacggccgggttgcggttcctgatgtcagaccctcac
cacccgtcctccgtctccgctcacagagacttcctctttcccgggcccaccagtgccttc
tcagcggccacctctctgaaggacaaagccgggcctcaccacccttatcccgggcttcct
cacccacacggatcggcccacgccccctccagcggatccccgacagcaggaacggcgcct
cctagcgagcgcatacccaccaagcctacctcagcaatgctgggcaacaccggcgagcat
cactccgacgaggaggccatcaacttgtccaaggtgaagcgaggcgtgggctcagccggc
tacaaggcgctgccctacccgctgaagaagcagaacggcaaaatcaagtacgagtgcaac
gtgtgcagcaagacctttggacagctgtcaaacctgaaggttcatcttcgtgtccacagt
ggagagagacctttcaaatgtcagacttgtaataaaggcttcacccaactggctcacctg
cagaaacactacctggtccacactggggagaagccacatgaatgccaggtttgtcacaag
cgcttcagcagcaccagcaacctcaagactcacctgcgcctccactcaggggagaaaccc
taccactgcaaactctgcccggccaagttcacccagttcgtccacctaaaattgcacaag
cggctgcactcccgcgagcgtccacacaaatgcgcccattgccaccgccactacatccac
ctgtgcagcctccgacttcacctgaagggctactgcctggcggccaactccggccccagc
acctcggccgccatggaggagatgcagcgggccaacgaggagatcgagcgcttcgacgtc
agcgagcacgccgagcagctggagcagctgcagggaggcgtggaggtggaggccatgttg
gagaagcaggtcttggggatgctgtggagggaggctgacctcgagccgtcccactatcac
tcccgtcacaagagcagcgccagcgagcttctgtcggtgggttacggcgtctacgagtcc
ccgaatgagacgtcggtcatcaagatgcgacgcagcagccccattacgccacttcctgcc
aacgtcactgtcaagcaggagtcagaggatcacgcttaa
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