Scomber japonicus (chub mackerel): 128367542
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Entry
128367542 CDS
T09718
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128367542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128367542
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128367542
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
128367542
NCBI-ProteinID:
XP_053184100
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Position
11:6454861..6481803
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AA seq
299 aa
AA seq
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MLATGAAVTNVTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSC
GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
DNLRAREALRQCLPDQLKDSTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDARGIPLAPQ
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgctggccacgggtgcagctgtcactaacgtaacagctctggcccaggtagaccgggag
aagatctaccagtggatcaatgagctgtccagtcctgagaccagagagaatgctttgctc
gagctcagcaagaaacgcgagtctgtgccggacttggcccccatgctgtggcactcctgt
ggcaccatcgccgccctgctgcaggagatagtgaacatctacccctccataaacccacca
acacttacagctcatcagtctaacagagtgtgcaatgctctggctctgctgcagtgtgtc
gcctctcacccagagacaaggtcggcctttcttgccgctcacatccctctcttcctttac
cctttcctgcacactgtgagcaaaacacggccgtttgaatacctgagactcaccagcctc
ggagtcataggtgctttggtgaaaacagacgagcaagaagtgattaacttcctcctcacc
actgaaatcatcccactgtgtctccgtattatggaatcagggagtgaactctcaaagacg
gttgcgaccttcatactgcagaagatcctgctggacgacacggggctggcctatatttgt
cagacatatgaacgtttctctcacgtggcgatgatcctcgggaaaatggttctgcagctc
tctaaagaaccatcagctcgtctgctcaagcacgtcgttcgctgctaccttcgcctctca
gataatctcagagccagagaggccctgcgtcagtgtctgccagaccagctgaaggatagc
accttcgctcaggtgctgaaggacgacaccaccaccaagcgctggctggctcagctggtg
aagaacctgcaggagggtcaggtgaccgacgctcgaggaatccccctggctccgcagtga
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