Scomber japonicus (chub mackerel): 128367575
Help
Entry
128367575 CDS
T09718
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128367575 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128367575 (sf3b1)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128367575 (sf3b1)
Spliceosome [BR:
sjo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128367575 (sf3b1)
Complex B
128367575 (sf3b1)
Complex C
U2 SnRNP specific factors
128367575 (sf3b1)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128367575 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
DUF2298
Motif
Other DBs
NCBI-GeneID:
128367575
NCBI-ProteinID:
XP_053184147
LinkDB
All DBs
Position
11:24833025..24846588
Genome browser
AA seq
1154 aa
AA seq
DB search
MMEQNLSKEEREIRQQLAEKAKSGDLKAVNGSAAAQAAVKRKRRWDQTADQTPSNATPKK
MSSWDQADVNAETPGHTPAHTPSNSRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGA
ATPGRDTPGHATPGHGGQTGSVRKNRWDETPKTERETQGWIDTPRTDRGDESVGETPTPG
ASKRKSRWDETPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWER
EIDERNRPLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAED
RTTKQMNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPP
MRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPY
VHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTAR
AFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEII
EHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAI
GYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEI
LPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVME
TIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLP
QICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVL
GSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYV
SAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRV
CTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVT
PLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAV
MGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYND
EKNIYVRYELEYVL
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcagaatctgtccaaagaggagagggagattcgtcagcagctggcagagaag
gccaaatcgggggacctgaaagctgtcaacgggtccgctgccgctcaagctgccgtaaaa
cgtaagcgtcgatgggaccagacagctgaccaaaccccctccaatgctacacccaaaaag
atgtccagctgggaccaggctgatgtcaacgctgagactccaggacacactcctgcacac
acaccctccaacagccgatgggatgaaacccctggccgccctaaaggcagtgagactcca
ggagccacacccagtacccgcatgtgggatcccactcccagccacacacccgctggtgcc
gccacccctggcagggatacacctggacacgccacaccgggccacggaggacaaacagga
agtgttcgcaagaaccgctgggacgaaaccccaaagacagaaagagagacccaaggctgg
attgataccccacgcacagacagaggagatgagtcggtgggtgagactccaaccccaggg
gccagtaagaggaagtctcgttgggatgaaacccctgccagtcagatgggctcctcaaca
ccattacttaccccaggaaagactcccataggaacccccgccatgaacatggccaccccg
acaccaggtcacctgatgagcatgactccagagcagctgcaggcatggaggtgggagagg
gaaattgatgagaggaaccgaccactcacagacgatgagctcgatgccatgttcccagag
ggatacaaggtcttgcctccaccagccggctacgtgccaatccgtactccagcccgtaag
ctgtcagctacacccaccccaattggtggcatgacgggcttccacatgcaggcagaggac
cgcacaacaaaacagatgaatgaccagccctcaggaaatctccccttcctcaaacctgat
gacatccagtattttgacaaactcctggttgaggttgatgagtccacgctgagccctgaa
gagcagaaagagaggaagatcatgaagctgctgctgaagattaaaaatggaacaccaccc
atgaggaaggcggctctgcgtcagatcacagataaagctcgtgagtttggagcgggcccc
ttgttcaaccagatcctgccactgctcatgtcacccaccctggaggaccaggagcgccac
ttgctggttaaagtcatcgaccgcattctctacaaactggacgacctggtccgaccatac
gtacacaagatcctggtggtgattgagcccctgctgattgatgaggactactacgccaga
gtggaaggcagagaaattatttccaatttggcaaaggctgctggtttggctacgatgatc
tccacaatgcgacccgatatcgacaacatggacgagtacgtcagaaacaccacagccaga
gccttcgccgtggtggcctctgccctcggtattccctctctgttgcccttcctcaaagcc
gtgtgtaaaagcaagaagtcctggcaggcccgacacacaggcatcaagatcgtccagcag
atcgccatcctcatgggctgcgccattttgccccacctccgcagcttggtggagattatc
gaacacggtctcgtggatgagcagcagaaggtgaggaccatcagtgctctggccatagct
gctctcgctgaagctgctacaccctacggtatcgagtcctttgactccgtcctcaagcca
ctgtggaagggtatcagacagcacagaggaaagggtctggctgccttcctcaaagctatc
ggctacctgatccctctgatggacgccgagtatgcaaactactacacaagagaggtgatg
ttgatcctcatcagagagttccagtcccccgatgaggagatgaaaaaaattgtcctcaag
gtggtgaagcagtgttgcggcacggacggtgtggaagccaactatatcaagactgagatc
ctaccccccttcttcaagcacttctggcagcacaggatggctctggacagacgtaactac
agacagttggtggacactacggtggagttggccaacaaggtgggagcagcggagatcatt
tctcgcatcgtggacgacctgaaagacgaggccgagcagtacagaaagatggtgatggag
accatcgaaaaaattatgggtaacctgggagcagccgacatcgaccacaagctggaggag
cagctgattgacggcatcctgtacgccttccaggagcagacgacagaggactctgtgatg
ttgaatggtttcggcacagtagtaaacgccctcgggaagcgtgtgaaaccctacctgcct
cagatctgcggtaccgtgctgtggcgtctgaacaacaagtcggccaaagtccgtcagcag
gccgccgacctgatctctcgcaccgccgtcgtcatgaagacctgtcaggaggagaagctg
atgggtcacttgggtgtggtgctgtatgagtacctgggagaagaataccccgaggtgctg
ggtagcatcctgggagcactgaaggccattgttaatgttattggtatgcacaagatgact
ccaccaatcaaagacctgcttccccgtttaacccccatcctgaagaacagacacgagaag
gtgcaggagaactgtatcgacctggtgggaaggattgctgacaggggtgctgaatacgtg
tcagccagggagtggatgaggatttgttttgagctgctggagttgctcaaagctcacaag
aaggccatccgcagagccaccgtcaacacgtttggttacatcgccaaagccatcggtccc
catgacgtcttggccacgctgctcaacaacctgaaggtccaggagcgtcagaaccgcgtc
tgcacaaccgtggccatcgccatcgttgccgagacctgttcgccgttcacagtcctgccc
gcactcatgaacgaatacagagtgcccgagctcaacgtgcagaacggcgtgctcaagtcc
ctgtccttcttgttcgagtacatcggagagatgggcaaagactacatctacgccgtcacg
ccgctgctggaggacgcactcatggacagagacctggtccacagacagacagccagcgcc
gtggtccagcacatgtctctcggcgtttacggttttggctgcgaagactccctcaaccac
ttgctcaattacgtctggcctaacgtatttgagacgtcgcctcacgtaatccaggccgtc
atgggtgcactggagggactaagggtcgccatcgggccctgccgcatgcttcagtactgc
ttacagggtctgttccatccagccaggaaggtgagagacgtctactggaagatttacaac
tccatctacatcggttcacaagacgccctcatcgctcactacccacaggtctacaacgac
gagaaaaacatttacgtccgctatgagctggaatatgtcttgtaa
DBGET
integrated database retrieval system
