KEGG   Scomber japonicus (chub mackerel): 128367652
Entry
128367652         CDS       T09718                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo04510  Focal adhesion
sjo04512  ECM-receptor interaction
sjo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128367652 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128367652 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128367652 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128367652 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:sjo00536]
    128367652 (col4a2)
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128367652 (col4a2)
Glycosaminoglycan binding proteins [BR:sjo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128367652 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128367652
NCBI-ProteinID: XP_053184239
LinkDB
Position
11:20342644..20399101
AA seq 1658 aa
MQGQHSRGVKNVRLVLLCLFIAILASGAHAGGKKHSGPCGGRDCSGGCKCFPEKGARGHP
GPLGPQGSQGPQGRRGDQGIQGHKGQKGDRGNSGIIGLKGNVGMTGVPGFSGNDGIPGHP
GQAGSRGRPGADGCNGTQGESGLPGQIGYNGSPGFPGQDGRKGEKGDTLEMSVFMERFRG
DPGTPGVNGIFGPQGDRGWEGNRGFIGPKGPPGPPGPKGQKGEIGPPGPPGNSTHSLILV
PYGPPGPQGMKGLKGELGDPADNKGEKGVMGFPGPRGPSGANGRHGPRGDSGEQGSIGRD
GPKGVRGDAGELITSGSLWPGSPDAGLPGLPGELGPQGERGPIGDQGSPGPPGRPASHTQ
QQVFDFIGPFGFKGDAGEKGQQGEPGLPAVTAGPPGIDGRPGFRGPPGPKGTWEEFFKGA
PGGRGRPGNAGFKGMKGDHGECACTVVNSLPGPPGPAGESGDAGMTGEFGQEGDSGDPGP
QGTDGFPGFPGLRGVPGPKGQKGALSVATQKGYSGDQGVPGHDGEFGAPGAPGLDGQSGF
PGNRGLPGDPRGEHGDKGYPGLPGRPGAAGLRGEPGPVIGGVKGQPGLPGDDGLAGYHGI
PGRPGSQGGCSGTGDGGQVDVTGPCIAIPGPPGLPGLPGPIGSSGIQGLTGQKGLQGPSG
TPGGKGETGHQGRGGHPGPPGFSGPRGTFGVPGSKGSVGNPGLPGMPGRNGAEGDKGVHG
EIFGASHGPPGDPGPPGLQGDKGEIGVPGEAGYQGMIGMPGMIGFKGESGPFGLQGEQGR
PGPAGKYGFPGDPGTAGPPGPLGATGQPGFTGVRGSDGDPGAPGPIGLKGVPGLYGNDGI
VGEDGSPGDPGQIGHLGHTGLTGIKGTTGSPGMSGFEGIRGNSGLKGFSGVKGETGLSGE
NGLTGVKGQIGEKGERGLMGPPGEKPHIPLYMLVDMKGLKGERGNFGNQGFTGPRGAKGL
PGVPGLEGTHGLPGDPSNEKGYHGDPGAQGLPGIKGMPGLTGNRGIIGFEGMDGNKGIKG
SPGAYGATGDKGRKGVKGDKGVRIDLPGSPGPRGELGLSGEPGEKGLFGHIGDRGPSGFD
GIEGKRGEPGDPGTSGYTGSDGQRGTPGNQGQKGFPGTPGKEGHPGFPGFRGSKGFPGLK
GLYGLHGLKGQKGISGTPGADTVGPAGQPGAKGDKGESGDPNNQQGVPGTLGLKGFQGPQ
GNQGQPGPAGFRGPQGQDGTQDKPGHAGDIGYTGPKGYQGFPGPRGFPGKDGPFGEKGIP
GLNGFPGLPGKKGFAGDPGEFGYRGPNGVSGKKGVKGEQGLMGIPGIIGFNGERGPVGPK
GNTGPPGSRGFPGNQGPPSLPIKIPGERGPVGPQGIQGPRGVKGEAGPTGPPGDSGFMGP
IGQKGMPGISGRPGIPGFRGEVGFKGHPGLQGMEGHRGKPGVTGLPGMPGRSVSVGYLLV
KHSQSEQTPMCPVGMSKLWDGYSMLYLEGQEKAHNQDLGLAGSCLPRFNTMPFLYCNPGD
ICYYASRNDKSYWLSTTAPLPMMPVVEGDIKPYISRCSVCEAPSVAIAVHSQDITIPQCP
VGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNGAKGTCHYFANKNS
FWLTSVDQSFHTDPTAETLKAGQLLSRISRCQVCMKNL
NT seq 4977 nt   +upstreamnt  +downstreamnt
atgcaaggacaacacagcagaggagtaaagaatgtgaggctggtgcttctgtgcctcttc
attgccatcctcgcctcaggagcgcacgcaggtggaaagaaacacagcggaccatgtgga
ggaagagactgcagtggaggctgtaaatgtttcccagagaagggtgccagaggtcaccct
gggcctcttggtcctcagggatcccagggccctcaagggagacgaggtgatcaaggcatc
caaggacacaagggccagaagggtgaccgtggcaatagtggcatcataggtctaaaagga
aatgtgggaatgacaggcgtacctgggttttctggaaatgatggcattcctggtcaccca
ggacaagctgggtccagggggaggccaggtgcagatggttgtaatgggactcagggagag
tctgggttaccaggacaaattggttacaatggctcacctggttttcctggacaagatggc
aggaagggagagaagggagacaccctggagatgagcgtgttcatggagcgattcagggga
gatccaggcacaccaggggtcaatggaatatttgggcctcaaggagaccgaggatgggag
ggtaacagaggcttcataggaccaaaaggtcccccagggcctccaggtcccaaaggacaa
aagggggaaatcggaccaccagggcctccaggaaactctactcattctctcattctggtc
ccctacggacccccgggaccacaaggaatgaagggtctgaaaggagaattaggagatccg
gctgacaacaaaggagaaaaaggtgttatgggattccctggaccacgaggaccctctggt
gcaaatgggaggcatggaccaaggggggattctggtgaacaaggttcaataggtagagat
ggtcctaagggagtcagaggtgatgcaggagagctgattacatcaggatccctttggcct
gggtctccagatgctggtcttcctggcctccctggtgagctgggtccacaaggagaaagg
ggcccaataggagaccaaggctcccctggacccccaggacgtcccgcctctcacacacag
caacaagtatttgatttcatagggccatttggtttcaagggagacgcgggggagaaaggc
caacaaggggaaccaggactccctgctgtcactgcaggacccccaggcatcgatgggcgc
ccagggttcaggggccccccaggtcccaaaggaacatgggaagagttcttcaagggggct
ccaggtgggagaggaagaccaggcaatgcaggcttcaaaggaatgaaaggtgatcatggg
gaatgtgcgtgcactgtcgtgaactctctacctgggccacctggccctgccggtgaaagt
ggtgacgctgggatgactggagagtttggtcaagagggtgattcaggagatccaggtccc
caaggaacggacgggttccctggatttcctgggctcagaggtgtgccaggtccaaaaggc
cagaaaggtgccttaagtgtggccacacagaaaggatattctggagaccaaggggttcct
gggcatgatggtgagttcggagcaccgggtgccccaggcctagatggccagtccggtttc
cctggcaaccgaggtcttccaggagatcctaggggagaacatggagacaaaggttaccca
ggtctgcctggtcgacctggtgcagctggtctgagaggagaaccgggtccagtcattgga
ggtgtcaaaggccagcctggtttacccggtgatgatggccttgcaggctatcatggaatc
ccaggaagacctggcagccaaggcggctgtagtgggacaggagatggaggacaggtggat
gtaacaggtccttgcattgctattccaggacctcctgggctgcctggacttccaggacca
attggatcatctggtatccaaggccttacaggccaaaaaggactgcagggtccatctgga
acaccaggagggaaaggagaaacaggacatcaaggtcgtggtggccatcctggaccacca
ggtttttctggcccccgtggaacctttggggttcctggcagcaaaggttcagtgggaaac
cctggtttgcctggtatgcctggtcggaacggggcagagggtgataaaggtgttcatgga
gaaatctttggggcatcacatggaccccctggtgacccaggaccgcctggacttcagggg
gataaaggagagattggagttccaggagaggcaggctatcagggaatgattggcatgcct
ggtatgatcggtttcaagggtgagtccggccctttcggtctgcagggggagcaagggagg
cctgggccggcagggaagtatggcttccctggtgatcctggcacagcaggtccacctggg
ccacttggcgccacaggacaaccaggtttcactggagtaaggggatctgatggggaccca
ggcgcaccaggtccaataggactaaaaggggtcccagggctatatggaaatgatggtatt
gttggcgaggatgggtcaccaggtgacccaggacagattggtcaccttggacacacagga
cttacaggaattaaaggaaccacagggtctcccggcatgtcaggttttgaggggatcagg
ggtaattcagggctgaagggcttcagtggcgtaaaaggagaaactggattatcaggagaa
aatggccttacaggagtgaaaggtcaaattggagagaaaggtgagcgtggattaatggga
ccacctggggagaagcctcatatccctctctatatgcttgttgacatgaagggactcaag
ggagaacgtggaaattttggaaaccaaggtttcactgggccaagaggtgctaagggttta
ccaggtgtaccaggccttgagggaactcatggtcttcctggagacccaagcaatgagaaa
ggttaccatggggatccaggtgcacagggcctgccagggataaaaggaatgcctggccta
actggaaatcgaggaatcattggctttgaaggaatggatggtaataagggaataaaagga
agtcctggtgcctatggtgcaacaggagataaaggaaggaagggagtcaaaggtgacaaa
ggtgtccgaatagacctaccaggatctcctggaccgagaggagagcttggtttgtcagga
gagccaggtgagaaaggattatttggacatattggggataggggcccctctggttttgat
ggtattgaagggaaaaggggagagccaggtgatccaggcacatcaggatacacaggttca
gacgggcagagaggaactcctggaaaccaaggtcaaaagggttttcctggaacacctgga
aaagaggggcacccaggttttcctggattccgaggaagcaaaggtttccctggcctgaag
ggtctttatggattacatggactaaagggacaaaagggtatctctggaactccaggtgcg
gatactgttggaccagctgggcagccaggagccaaaggagataagggagaaagtggtgat
cccaataaccagcagggtgttccaggcacattgggtttaaagggcttccagggacctcaa
ggtaatcagggtcaacctggaccagctggattccgtggccctcaaggacaagatgggacc
caagacaaaccaggacacgctggagacattggatatacaggacctaaaggataccaaggt
ttccccggacccagaggttttcctggtaaagatggccccttcggagaaaagggtatacca
ggtttaaatgggtttccggggctccctggtaagaaaggatttgcaggagacccaggtgaa
tttggatacagaggacctaatggtgtctcagggaagaaaggagtgaaaggagagcaagga
ctaatgggaattcctggtattattggttttaatggagaaaggggaccagtcggtccaaaa
ggaaacactggaccccccggctcccgtgggtttccaggcaaccagggtcctccttcacta
cccatcaaaattccaggagagaggggtcccgtgggaccacagggtatccaaggaccaagg
ggggtcaaaggagaagcagggccaacgggaccccctggggactcaggcttcatgggaccc
attgggcagaagggcatgcctgggattagtggcagaccaggaatacctggtttccgtgga
gaggttggatttaagggccaccctggtctgcaaggcatggaaggtcaccgtggaaaacct
ggtgtcactgggttgcctggtatgcctggccgcagcgtcagtgtgggttacttgttggtt
aaacacagccaatcagaacagacacccatgtgccctgttggtatgtctaaactgtgggat
ggatacagtatgctgtacctcgagggccaggaaaaggcccacaaccaggatcttggtttg
gcaggatcctgcctcccacggtttaacaccatgcccttcctctactgcaatcctggagac
atttgttactatgccagcagaaatgataagtcatactggttgtcaacaacggctcctctt
cctatgatgcctgtagtagagggagacatcaagccatatatcagccgctgctcagtatgt
gaggcgccatcagttgccatagcagtccatagccaggacatcactatcccacagtgtcct
gtaggttggcgcagcctgtggatcggctactctttcctcatgcatactgcagcaggaaat
gaaggtgggggtcagtccttgtcatcgcctggctcctgcctggaggatttccgaacaaca
ccattcatagagtgtaatggggccaaaggcacatgccactactttgctaacaagaacagc
ttctggttaacctccgtagatcagtcattccatactgatcctacagcagagacgctcaaa
gcaggccagctcctgtcacgcatcagccgttgccaggtctgcatgaagaacttgtga

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