Scomber japonicus (chub mackerel): 128367874
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Entry
128367874 CDS
T09718
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128367874 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128367874 (mid1)
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128367874 (mid1)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128367874 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
TRIM_CC
PRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
128367874
NCBI-ProteinID:
XP_053184518
LinkDB
All DBs
Position
11:complement(18939385..18958421)
Genome browser
AA seq
669 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIQSISAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPNETRRERTVPDSKAMTSPSDRVQ
CQFCEQDPPQDAVKTCVTCEVSYCEECLKATHPNKKPFTGHRLIEPLLDSHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYDKLKQALDSNLSSLLKRTSELE
SLMGKLIQTCQHVEVNASRQENKLVEECDLLINIIQQRRQIIATKIKEGKAIRLRKLAQQ
IASCKQCIERSSSLITQADQTLKETDHTRFLQTAKSICERVSMATASSQILLPEINLNDT
FDTFALDFTREKKMLESLDYLTAPNPPVIREELCTASYDTITVHWTSDDEFSVVSYELQY
AIFTSQSNVVSLCNSADSWMIVPNIKQNHYTVHGLQCGTKYIFIVKAINQAGNRSSEPGK
LKTNSQPFKLDPKSAHRKLRLSHDNLTVERDETSSKKSHSQDRFSSHSSYGVTGNVYIDS
GRHYWEALIGGSTWFAVGIAYKSAPKHEWVGKNSASWVLSRCNNSWVVRHNSKEMPIEPS
PHLRRLGILLDYDSGSLSFYDAVGSQHLHTFDVTFAQPVCPVFNVWNRCVTILTGLPIPD
HLEGTDYNN
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaacattggagtcggagctgacctgcccaatctgtctggagctttttgaggacccg
ctgctcttgccctgtgcacacagcctttgtttcaactgtgcccatcgtatcttagtgtcc
cactgcacgcccagtgagccaattcagtccatcagcgccttccagtgcccgacctgtcgc
tatgtcatcaccctcaaccagaggggcctagagggactcaaacgcaacgtaactctgcag
aacatcatcgaccgctaccagaaggcttctctaagtggacctaattctcctaacgagact
cggcgtgagagaaccgtccccgacagcaaagccatgacatctcccagcgacagggtgcag
tgtcagttctgtgagcaggaccctccacaggacgctgtgaagacctgcgtgacctgcgag
gtgtcatactgtgaagagtgtctcaaagccacccatccaaacaagaagcctttcacgggc
caccgtctaatcgagccactgctggactcccatctgcgtgggctcatgtgtctggagcat
gaggatgagaaggtcaacatgtactgtgtgacagatgaacagttgatctgtgccttgtgt
aagctggttggccgacaccgggaccaccaggtagcagccctcagtgaccgatatgataaa
ctcaagcaagccttggattccaacctcagcagtctactcaagaggaccagtgagttggaa
tctctgatgggcaaacttatccaaacctgccaacacgtagaggtaaatgcatcaagacaa
gaaaacaagctggttgaagagtgtgacctgctgattaatatcatccagcagcgaagacaa
atcatagcaaccaagataaaggagggaaaggctattagactgaggaaactagcccagcag
atagccagctgcaagcagtgcattgagagatcttcctccctcatcactcaggccgaccaa
accctcaaggagacagaccacactcgcttccttcagacagctaaaagcatctgtgagaga
gtctctatggcaacggcgtcttctcaaatcctgttacctgaaataaacttaaatgacacc
tttgatacttttgctttggacttcacgagggagaagaaaatgctagaaagtttggattac
ctcacagcgccaaatccaccagtaatccgtgaggaattgtgcacggcttcgtatgacaca
attacagttcattggacatctgatgatgagttctctgttgtgtcatatgaacttcagtac
gccatcttcaccagccagtctaatgttgtcagtttgtgtaactctgctgatagctggatg
atagtgccaaacatcaagcaaaatcactacactgtgcacgggcttcagtgtggcaccaag
tacattttcatagtgaaggccataaaccaggctggaaaccggagcagcgaaccagggaaa
ctcaagaccaacagtcagccattcaaattggatccaaagtctgctcaccggaagctgagg
ttgtcccatgacaacctgactgtggagagagacgagacatcatctaagaagagccacagt
caagaccgcttctccagccacagcagctacggtgtcacagggaatgtctatattgacagt
ggtcgccattattgggaggctctgataggaggaagcacatggtttgcagttggcatcgcc
tacaagtcagcaccaaaacacgagtgggttggcaaaaactcagcctcctgggtactgtct
cgctgtaacaactcgtgggtagtgcgtcacaacagtaaggagatgcccatcgagccctca
ccccacctgaggcgtctcggaatattgttggactacgactctggatctctgtctttctac
gatgcagttggctctcagcacttgcatacgttcgacgtcacctttgctcagccagtctgc
cctgtgttcaacgtgtggaacagatgtgtaacaatcctcactggacttcccattccagat
cacttagaggggacagactacaacaactga
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