Scomber japonicus (chub mackerel): 128368027
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Entry
128368027 CDS
T09718
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128368027 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128368027 (prpf40a)
Spliceosome [BR:
sjo03041
]
Complex A
U1 snRNP components
U1 related factors
128368027 (prpf40a)
Complex B
128368027 (prpf40a)
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
128368027
NCBI-ProteinID:
XP_053184720
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Position
11:17743377..17760508
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AA seq
861 aa
AA seq
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MPPPFMGPPGIPPHFPPMGMPPMGQRPPSMTPMPPGIIPPGMMPPMGAPPMGQMPGMMPP
MMPGMMMPPRMPAAAVQPTGPPGVESTAAAPGTTSATNGSPQEEQPKKKSLWTEHKSLDG
KTYYYNTETKQSTWEKPEELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKE
LEDLEAMIKAEENGTVEAAAPNSALAPAVQADTTATMATVMEAETATAVSEEHLSQAAVH
HTAETAEAPVASAESTVATEAIASIEVPKEERPELQKKTYKWNTKEEAKQAFKELLKEKG
VSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQ
RFLENHEKMTSTTRYKKAEQMFSEQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRK
RNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRAL
EKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHDHGQLHSMSAWMEMYPTLSSDIRFAN
MLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEVNTSFDDFGS
VISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKNMLKQATPPL
EPETTWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKH
HRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERSYKKSKKHKKKGKKRRHKS
ASPDTDNEKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQKSPKRKAAKEEGGWDTSGS
ELSEGELEKRRRTLLEQLDAP
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccccctttatgggaccacctggaataccgcctcatttccctcccatgggaatg
cctcctatgggacagcgacctcccagcatgaccccgatgcctcctggtataattccccct
ggtatgatgccgccaatgggggcacccccaatgggacagatgccaggcatgatgccaccg
atgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaaccgacggga
ccgcccggtgttgaatccacagctgctgcacctggaacaactagtgccacgaatggatct
ccacaggaagaacagccaaagaagaagtccctgtggaccgaacacaaatcactggatgga
aagacctattattacaatacagagaccaagcagtccacatgggagaaaccagaagaactc
aaatctcctgcagaacaaatgctgtctaaatgtccttggaaagagtataagtcagacaca
gggaagccttattattacaactctcagacgaaggagtccagatggacgaaacccaaagag
ctggaggatctggaagccatgatcaaagcagaggagaacggaacggtagaagcagcggct
cccaactccgccttagctcctgctgtgcaagcagataccacagccactatggcgaccgta
atggaggcagaaactgcaacagcggtctcagaggaacacctgtcccaggcggccgtgcat
cacacagctgagaccgcagaagcacctgtggcttcagcagagagcacagtcgccacagag
gctatagccagtattgaagtcccaaaagaagagcggccagaacttcagaagaagacttac
aaatggaacacgaaagaggaggccaagcaagctttcaaagagctgctgaaggagaagggt
gtgtcctcaaactcctcttgggaacaggccatgaaaatgatcatcaatgatcctcgctat
agcgcactccccaagctgagtgagaagaagcaggcatttaatgcctacaaagtccaaacg
gagaaggaagaaaaggaggaagccagaattaagtacaaggagtcaaaagaaacctttcag
cggttcttggagaaccatgagaagatgacatctaccaccagatacaagaaagcagaacag
atgtttagtgagcaggaggtgtggagctgcgttccagagagggacaggctggagatctat
gaagatgtgctgttctacctagctaagaaagagaaggaacaagccaagcagctgaggaag
aggaactgggaagctctgaagaacattcttgacaacatggccaacgtcacctaccgcacc
acctggtcagaggcccagcagtacctgctagataaccccacctttgcagaagatgaggag
ctacagaatatggacaaagaggatgccctcatttgttttgaggagcacatccgggcactg
gagaaggaagaggaggaagagaaacagaagactcttctcagggagaggagaagacaacgc
aagaacagagaggccttccagaaatttcttgatgagctccacgaccacggccagcttcac
tccatgtctgcctggatggagatgtacccgaccctgagctcagacatccgctttgccaac
atgctgggacagccggtgtatggtgtgtattctgcaggttccaccccccttgatctgttc
aaattctatgtggaggacttaaaagcccgctaccatgatgaaaagaggatcattaaagat
attcttaaggataaaggcttcctggttgaagtgaacaccagctttgatgactttggatca
gtcatcagctcagataagagagccactacactggatgcaggaaacataaagctggccttc
aacagtttactggagaaggctgaagccagagagagagagcgagagaaggaggaggcgagg
aagatgaaaaggaaagaagcggccttcaagaacatgctgaagcaggccacaccaccgctg
gagccagagactacatgggagggagtcagagagagattcttaaaggagtctgccttcgaa
gacgtaaccctggagtcagagaggaaacggatattcaaagacttcatgcatgtcttggag
catgaatgccaacatcaccactccaagacaaagaagcactcaaagaagtctaagaagcat
cacaggaaacgatcccgctctcgatcaggctcagagtctgaggatgaggaataccacaag
aagaaaaagaggtcgcagtccaaatctccttctgaacgctcctccagtggagaatctgag
agaagctataagaaatccaagaagcacaagaagaagggaaagaagagacgccacaagtct
gcatcaccagacactgacaacgagaagaaaggaagagagcgtgatggaaagcgtgaaaag
gacctagagaaagataaagagaacgacaagtctcgggggaaatctcgctccgactctaaa
cagaagtctcctaaaaggaaagcggccaaagaagagggtggctgggatacgtcgggcagt
gagctgagtgagggagagctggagaaaagaagaagaactttactggaacagctggatgca
ccttga
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