KEGG   Scomber japonicus (chub mackerel): 128368080
Entry
128368080         CDS       T09718                                 
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B
  KO
K07888  Ras-related protein Rab-5B
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo04137  Mitophagy - animal
sjo04144  Endocytosis
sjo04145  Phagosome
sjo04148  Efferocytosis
sjo05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    128368080 (rab5b)
   04145 Phagosome
    128368080 (rab5b)
   04137 Mitophagy - animal
    128368080 (rab5b)
   04148 Efferocytosis
    128368080 (rab5b)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    128368080 (rab5b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sjo04131]
    128368080 (rab5b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128368080 (rab5b)
   04031 GTP-binding proteins [BR:sjo04031]
    128368080 (rab5b)
Membrane trafficking [BR:sjo04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    128368080 (rab5b)
 Endosome - Lysosome transport
    128368080 (rab5b)
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   128368080 (rab5b)
  Exosomal proteins of other body fluids (saliva and urine)
   128368080 (rab5b)
  Exosomal proteins of colorectal cancer cells
   128368080 (rab5b)
  Exosomal proteins of melanoma cells
   128368080 (rab5b)
GTP-binding proteins [BR:sjo04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    128368080 (rab5b)
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU Gtr1_RagA RsgA_GTPase MMR_HSR1 SDR-like AAA_16 Tfb2_C
Other DBs
NCBI-GeneID: 128368080
NCBI-ProteinID: XP_053184792
LinkDB
Position
11:complement(24537508..24541153)
AA seq 216 aa
MSSRGSGGRSNGTLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLA
QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQ
RQASPNIVIALAGNKADLAEKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNELFLAIAK
KMPKTDTQNPTHAARHRGVNLQDPDAHSNRACCGGN
NT seq 651 nt   +upstreamnt  +downstreamnt
atgagctccagagggagtggtggccgctccaacggcacactaccacagaccaagatctgc
cagttcaagttggtgctgctgggtgacatggccgtgggcaagtccagcctggtgctgcgt
ttcgtcaagggacaatttgatgagtttcaagagacaaccattggagctgcattcctggcc
cagtcagtgtgtctagatgacactacagtgaagtttgagatctgggacactgcaggacaa
gagcgatatcatagtctggctcccatgtactaccgtggggctcaggctgctatcgtggtc
tttgacatcactaaaccggagacttttgagagagccaaggcctgggtgaaggagctgcag
aggcaggccagtcctaacattgttatagctctggctgggaataaggctgacctggcagag
aagagactagtggagtatgaggaagcccagacgtatgctgaagacaccggtttgctgttt
atggagacctctgcaaagacagccatgaacgtcaatgagctcttcctggctattgcaaaa
aagatgccaaaaacagacacccaaaaccctacacatgcagcacgacaccggggagttaac
ctccaggacccagatgcccactcaaaccgagcctgctgtggtgggaactag

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