Scomber japonicus (chub mackerel): 128368080
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Entry
128368080 CDS
T09718
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B
KO
K07888
Ras-related protein Rab-5B
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04137
Mitophagy - animal
sjo04144
Endocytosis
sjo04145
Phagosome
sjo04148
Efferocytosis
sjo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128368080 (rab5b)
04145 Phagosome
128368080 (rab5b)
04137 Mitophagy - animal
128368080 (rab5b)
04148 Efferocytosis
128368080 (rab5b)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128368080 (rab5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128368080 (rab5b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sjo04147
]
128368080 (rab5b)
04031 GTP-binding proteins [BR:
sjo04031
]
128368080 (rab5b)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
128368080 (rab5b)
Endosome - Lysosome transport
128368080 (rab5b)
Exosome [BR:
sjo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128368080 (rab5b)
Exosomal proteins of other body fluids (saliva and urine)
128368080 (rab5b)
Exosomal proteins of colorectal cancer cells
128368080 (rab5b)
Exosomal proteins of melanoma cells
128368080 (rab5b)
GTP-binding proteins [BR:
sjo04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
128368080 (rab5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
Gtr1_RagA
RsgA_GTPase
MMR_HSR1
SDR-like
AAA_16
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
128368080
NCBI-ProteinID:
XP_053184792
LinkDB
All DBs
Position
11:complement(24537508..24541153)
Genome browser
AA seq
216 aa
AA seq
DB search
MSSRGSGGRSNGTLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLA
QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQ
RQASPNIVIALAGNKADLAEKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNELFLAIAK
KMPKTDTQNPTHAARHRGVNLQDPDAHSNRACCGGN
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgagctccagagggagtggtggccgctccaacggcacactaccacagaccaagatctgc
cagttcaagttggtgctgctgggtgacatggccgtgggcaagtccagcctggtgctgcgt
ttcgtcaagggacaatttgatgagtttcaagagacaaccattggagctgcattcctggcc
cagtcagtgtgtctagatgacactacagtgaagtttgagatctgggacactgcaggacaa
gagcgatatcatagtctggctcccatgtactaccgtggggctcaggctgctatcgtggtc
tttgacatcactaaaccggagacttttgagagagccaaggcctgggtgaaggagctgcag
aggcaggccagtcctaacattgttatagctctggctgggaataaggctgacctggcagag
aagagactagtggagtatgaggaagcccagacgtatgctgaagacaccggtttgctgttt
atggagacctctgcaaagacagccatgaacgtcaatgagctcttcctggctattgcaaaa
aagatgccaaaaacagacacccaaaaccctacacatgcagcacgacaccggggagttaac
ctccaggacccagatgcccactcaaaccgagcctgctgtggtgggaactag
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