Scomber japonicus (chub mackerel): 128368264
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Entry
128368264 CDS
T09718
Symbol
si:ch211-214p13.3
Name
(RefSeq) nectin-4
KO
K06081
poliovirus receptor-related protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03266
Virion - Herpesvirus
sjo04514
Cell adhesion molecule (CAM) interaction
sjo04517
IgSF CAM signaling
sjo04520
Adherens junction
sjo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
128368264 (si:ch211-214p13.3)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
128368264 (si:ch211-214p13.3)
04517 IgSF CAM signaling
128368264 (si:ch211-214p13.3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
128368264 (si:ch211-214p13.3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128368264 (si:ch211-214p13.3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128368264 (si:ch211-214p13.3)
04090 CD molecules [BR:
sjo04090
]
128368264 (si:ch211-214p13.3)
Cell adhesion molecules [BR:
sjo04515
]
Immunoglobulin superfamily
Nectin family
128368264 (si:ch211-214p13.3)
CD molecules [BR:
sjo04090
]
Proteins
128368264 (si:ch211-214p13.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
V-set
ig
I-set
Ig_2
C2-set_2
C2-set_3
Ig_5
Ig_4
Ig_PDGFR_d4
DUF4578
Motif
Other DBs
NCBI-GeneID:
128368264
NCBI-ProteinID:
XP_053185027
LinkDB
All DBs
Position
11:complement(19738387..19764207)
Genome browser
AA seq
401 aa
AA seq
DB search
METQFLYLSSSGTYRRSQARCVTWSYNLLFVVYVCLIILVIRDIEGVQVTGGDVTVVQGG
AIILPCKLTDTVESLTQISWQRKTREKPQNKNFFIIPATNGPRFVDGHDDRFQFVGSISD
FNGSLQISRATLMDEGVYTCIFTLFPSGNYKAEINLNLLVPPVTSLKDNCPVLGNVEASL
VTCTAEGSRPSAEVTWHTGTLKEKVRTATNSTQHANGTTTTESSLFGVPTREISQQQVQC
VITSKALQKEETLPFTIQVYFSPREVTINKSDDSFQCLSEANPPANFTWSRPDGLWPKSA
VAEGATLRFSSMTSDLNGEYQCEASNQYGRKYSHLYLHVSSGHCSTCWTLFSILLILIVF
GAAAVWYRRTKVPSTAQSIDVLYIVLLLNKQAYVCSYFVLY
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggagacacagtttttgtacctgtcctcctccgggacctacaggaggtcacaagcacgg
tgtgtcacttggagctacaacctgctgtttgtggtgtatgtatgcctaattatcctggtc
atcagagacatagagggtgtccaggtgactggaggagacgtaactgtggtgcaaggaggg
gccatcatcttaccttgcaaactcactgacacagtagagagcctgacacagatttcctgg
cagaggaagacaagagaaaaaccacaaaataaaaacttttttataattcctgccacaaat
ggaccacggtttgttgatggacatgatgatcggtttcaatttgttgggagcatttctgac
ttcaatggatctctccaaatatccagggccacactcatggatgaaggtgtctacacatgc
atctttactttgtttcccagtggaaattacaaggcagagataaatctgaacctgcttgtg
cctccagtcacaagcttgaaggataattgtcctgtcttgggtaatgtggaggcttccctc
gttacttgcacagctgaaggttcccggccttctgcagaggtgacgtggcatactggtacc
ctgaaagaaaaggtgaggactgcaaccaattccacccagcatgctaacggtacgaccacc
acagagagctcgctgtttggagtacccaccagagaaatcagccagcaacaggtccagtgt
gtcatcaccagtaaagccctgcagaaagaggagactctgcccttcaccatacaggtctac
ttttcaccaagagaagtgactatcaacaaatccgacgactcatttcaatgcttatctgaa
gctaaccctcctgccaactttacctggagcagacctgatgggttgtggcctaaatctgct
gttgcagagggtgcaacgctacgcttctctagtatgacctctgacctgaatggcgagtac
caatgtgaagcatcaaatcaatacggaagaaaatacagccacctttatttgcatgtgtct
tcaggacactgcagtacatgttggaccttattcagtattttgcttatcctgattgtcttc
ggagctgctgcagtgtggtaccgacgtaccaaggtaccaagtacagcacaaagcatcgat
gtactgtatatagtacttttgctcaacaaacaagcatatgtatgtagttattttgtttta
tattaa
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