KEGG   Scomber japonicus (chub mackerel): 128368278
Entry
128368278         CDS       T09718                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo04510  Focal adhesion
sjo04512  ECM-receptor interaction
sjo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128368278 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128368278 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128368278 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128368278 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:sjo00536]
    128368278 (col4a1)
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128368278 (col4a1)
Glycosaminoglycan binding proteins [BR:sjo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128368278 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128368278
NCBI-ProteinID: XP_053185042
LinkDB
Position
11:complement(20300357..20341994)
AA seq 1641 aa
MLLPTGTLLLLAALSLSVDLTKAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGAMGSKGDFGESGAPGIKGVRGPPGLPGFPGNPGLPGINGNDGPPGAPGIPGCN
GTKGDRGRDGTSGFPGLQGPPGIPGHPGLKGEAGGVIGIVPLKGERGFPGTPGLPGSNGY
PGPTGPPGPRGYQGPKGDPGQPGPPGDKGDKLAFVGGKGDKGDQGFRGPPGPPGPPAQSH
DGTPITNYIPGPKGDTGYPGEKGDKGFCIPYHNGVKGDPGPPGQIGKAGKEGETGPKGEK
GFPGNPGYIGTQGEKGERGPPGYGSGAPGPPGPRGFPGLQGEKGFPGPQGEAGPPGQFIE
GPRGERGQKGDIGEKGDRGVEGESLAGPPGQPGLTGAPGPPGLPVDPNECNIEKGAPGPP
GPPGLQGELGQKGDQGDTCFQCEGSGPTGLPGPQGAKGERGPPGAVGGKGEKGQSGPAGN
PGRPGTEGSQGLIGVPGAVGEPGDIFIAPGLKGDKGLPGVPGSPGKRGLDGQPGRDGNPG
IPGLKGEPAKEGIKGERGPQGDPGLTGTHGERGPPGLPGFGQPGDPGEKGNPGRQGNPGT
PGVPGAKGEPGHTVSTPGPQGIPGPRGEPGRPGHQGDRGNPGDPGVSGYPGQKGDTGPPG
IGLPGPTGPKGVSGIPGTQGFPGEPGRPGQDGLTGKPGSPGQKGEPGRGLPGPKGEQGRQ
GITGFQGEKGNIGLPGVPGQEGLTGKPGPQGIKGEIGPPGLPGVVGSPGAPGKGSPGSPG
PQGQPGEPGPYGRDGVKGEKGYPGPPGLDMPGPQGEKGGPGFPGTPGSKGLPGPPGLPGR
DGLIGNQGPKGEMGVMGTPGVPGFPGPPGTPGSPGLRGDPGLPGSRGFIGETGSKGERGD
TGLQGPPGNMTEVDMEHMKGEKGDIGDHGDPGVTGEKGYRGQPGDPGMPGKDGEPGSPGQ
PGEKGDPGFPGRTGSIGQPGQKGSVGEMGIPGPVGPKGSKGDFGTPGHPGFRGTDGEKGD
TGLPGEAGIGLPGHQGEKGQTGQPGFPGTPGDKGQKGHMGMPGKPGGQGTKGEQGIIGYQ
GQPGIPGEKGTPGLPGSPGEPGQDGQAGEGGLQGPPGPTGEKGEPGVDGIPGSSGERGDP
GLPGRGFPGSPGVFGDKGDKGSPGFPGTPGQPGIPGIKGDKGHQGLPGVQGETGDRGFPG
ASLEGPKGERGETGQPGEAGSTGAPGPSGVPGRDGLKGDKGDQGLAGFQGETGHKGDPGT
PGFPGQAGLPGIDGQKGERGLQGVPGFPGIKGNAGDSGFKGELGDRGFPGEKGVDGPPGP
PGPHTFIKGDIGFPGSQGLPGPQGPSGFPGQKGLQGLTGLQGPKGEDGFPGHHGQSGAKG
EQGLPGPQGPRGHPGPPGPDGVPGQVGQPGPSSMEHGFLVTRHSQSVDIPPCPDGTSRIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMTMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPHGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFTKPVPT
TLKAGNLRTHISRCQVCMKRT
NT seq 4926 nt   +upstreamnt  +downstreamnt
atgctgctaccgacaggtactctgttactgctggcggctctctcactaagcgttgacctg
actaaagctgagggttgtggagcatcatgtggaaaatgcgactgcagtggcgtgaaagga
gcaaagggtgagcgtggatttccgggtcttcaaggcaatatgggattcccagggatgcag
ggacctgaggggcctccaggggcaatgggaagtaagggagattttggtgaatctggggct
cctggaataaaaggagtgcggggtcctcctggtctgccaggttttccaggaaacccagga
ctaccaggcatcaatggaaatgatggtccacctggtgcgccaggtatcccaggatgcaat
ggaactaaaggagacagaggcagggatggcacttctggttttcctggtcttcaaggacca
cctggcataccaggacatcctggattgaagggtgaagctggtggtgtgattgggattgtt
cccttgaaaggagaaagagggttcccggggacacctggacttcctggatcaaatggatat
cctggacctaccggccccccaggacctcgtggctatcaaggacccaaaggtgatcctggt
caaccaggccctcctggagacaagggtgacaagctggcctttgtgggtgggaaaggagat
aagggtgaccaaggatttcgtggcccacctggccctcctggacctccagctcagtcacat
gatggaacacctatcacaaattatatacctggaccaaagggagacacaggatatccagga
gagaaaggagacaaaggcttttgcatcccttatcacaatggtgtcaaaggtgatccaggc
ccacctggacaaataggcaaagctggaaaggagggagagactggacccaagggagaaaaa
ggctttcctggcaatcccggatacatcggtactcagggtgaaaaaggagaaagaggacca
ccaggctacggtagtggtgcccctggtccccctggccctagaggtttcccaggtttacaa
ggagaaaaaggttttcctggtccacagggagaggcaggtcctccaggccaattcattgaa
gggcctcgtggagagaggggtcagaagggagacataggtgagaaaggagacaggggtgta
gaaggagagtctctagctggacctccaggacaacccgggctcactggagcccctggacca
ccaggactgccagttgaccccaatgaatgtaacattgagaaaggagctcctggaccacct
ggaccacctgggttacaaggggaactgggacagaaaggtgaccaaggagatacctgtttt
cagtgtgaaggttccggccccaccggattacctggcccccagggcgctaaaggagagagg
ggacctcctggagcagttggtggcaaaggagaaaagggtcaatctggaccagctggaaat
cctggaagacctggtactgaaggcagtcaagggctaataggagtccctggtgctgttggt
gagccaggggacattttcatagctcctggtctgaagggggacaaaggtctgcctggtgtt
cctggttcacctgggaagcgggggctggatggacaaccagggagagatggcaatcctggt
atacctggccttaaaggagaacctgccaaagaaggcatcaagggtgagcgtggaccacag
ggggaccctggtcttactggaacccatggagagaggggtccccctggtttgccaggcttc
ggacaaccgggagatcccggagagaagggcaatccggggagacaaggcaatcctggaaca
cctggagtacctggtgcaaaaggtgagccaggtcatactgtgagcacacctggacctcag
ggtatacctggaccacgaggagaacctggcagacctggacatcaaggtgacagaggcaat
ccaggagaccccggggtgtcaggttaccctggacaaaaaggtgacaccgggccccctgga
attggattgccaggcccaactggtcccaaaggagtcagtgggattccaggaactcaggga
tttccaggagagccaggaagaccaggacaggatggccttactggaaaacctggttcacct
ggacagaaaggtgagccaggacgaggactgccaggcccaaaaggtgaacagggacgccaa
ggaattactggcttccagggagagaagggtaacattggactacctggtgttcctggacag
gaaggcctgacaggaaaaccaggacctcagggaatcaaaggtgaaattggacccccagga
cttccaggagtggttggatcaccaggtgctccaggaaaaggttcacctggctctcctgga
ccacaaggacaacctggagagccgggaccatacggtagggatggtgtaaagggagaaaag
ggctacccgggtcctcctggtctggacatgccagggcctcagggagagaagggaggccct
gggttcccgggaactccaggttctaaaggactgccagggccaccaggcttacctggcagg
gatggactgattggaaaccaaggtcctaaaggtgagatgggtgtcatggggacacctgga
gtaccaggatttcccggaccccctggtacacctggatctcctggtcttagaggtgaccct
ggtcttcctggatcaagagggtttattggagagactggatctaaaggagaaaggggtgac
accggtcttcagggacctcctgggaacatgactgaagttgacatggagcatatgaagggg
gaaaagggagacatcggagatcatggcgatcctggggtcactggagaaaagggctaccga
ggccaacctggagatcctggaatgcccggcaaagacggagagcctggttcacctggacaa
ccaggtgagaaaggagatcccggttttcctggaaggactggcagtattggacaacctgga
cagaagggaagtgtaggagagatgggaataccaggtccggttggtccaaagggtagtaaa
ggtgattttggtacaccaggacatcctggcttcagaggcacggatggagagaaaggagac
acaggattacctggtgaggcaggtatcggtctcccgggacatcaaggcgaaaagggtcag
acaggccagccaggattcccaggaacaccaggagataagggtcagaaaggtcatatgggt
atgcctggcaagccaggaggacaaggaactaagggagaacaaggaatcattggctatcaa
ggtcagccaggtataccaggtgagaagggtaccccagggctgcctgggtctccaggagaa
cctggtcaagatggtcaggctggtgaaggtggcttgcagggacctccaggtcctactgga
gagaagggagagcctggagtggatggcatccctggatcctctggagagagaggagaccca
ggtttacctggccgaggtttccctgggtcacctggagtgttcggtgacaaaggtgacaaa
ggtagccccggtttccctggtactccaggtcaaccaggtatccctggtatcaaaggcgac
aagggacatcaaggacttccgggagtccagggtgagacaggagacagggggttccccggt
gcctctctagagggccctaaaggagaacggggagaaacaggacaacctggagaagcagga
tccacaggagcacctggaccctctggtgtgccaggcagagatggcttaaagggagacaaa
ggagatcagggtctcgctggtttccagggagagacaggacataagggtgaccctggaact
cctggatttcctggacaagctggccttccaggtattgatggacagaagggagagagggga
ctgcagggtgttcctggcttcccaggtataaagggtaatgctggagactcaggattcaaa
ggagaacttggagacagaggattcccaggagaaaagggtgttgatggcccccctggtccc
cctggcccccacaccttcatcaaaggagacattgggttcccaggctctcaaggcttacca
ggaccacagggcccatctggattccctggacagaagggactgcaaggtttgacaggtctt
caagggccaaaaggtgaagatggcttccctggacatcacggtcagtctggagctaaagga
gaacagggcctgcctgggccacaaggccccagaggacaccctggcccccctggacctgat
ggtgttccaggtcaagtgggacagcctggcccctcctccatggagcacggtttcctggtc
acccgtcacagccaatcagtggatattccaccttgtcctgatgggacctcacgcatatat
gatggctactccctgctctatgttcaaggcaacgaacgctctcacggacaggatcttggt
acggcagggagttgtctgaggaagttcagccccatgcccttcctgttctgtaacatcaac
aacgtgtgcaactttgcctcccgtaatgattactcctactggctcacctcccctgagcct
atgcccatgaccatggcaccaatcactggtgaaagcatcaaacccttcatcagcagatgt
gctgtgtgtgaggccccagccatggtgattgcagttcacagtcagaccatcatgatccca
ccatgtcctcacggctgggactctctgtggattggctactcatttgtcatgcacaccagt
gccggtgctgagggctcagggcaggctctggcctctcctggatcctgcctggaggagttc
cgcagcgctccattcatcgagtgtcacggtcgtggaacctgcaactactacgccaactct
tacagcttctggctcgcaacaattgaagacagcgagatgtttacgaaacctgtccccaca
acactaaaagcaggaaatctccgaacacacataagccgttgtcaggtgtgcatgaagagg
acttaa

DBGET integrated database retrieval system