Scomber japonicus (chub mackerel): 128368366
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Entry
128368366 CDS
T09718
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128368366 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368366 (bard1)
04121 Ubiquitin system [BR:
sjo04121
]
128368366 (bard1)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128368366 (bard1)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128368366 (bard1)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
128368366 (bard1)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
128368366 (bard1)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
128368366 (bard1)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
128368366 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
Ank_KRIT1
zf-RING_5
PTCB-BRCT
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
128368366
NCBI-ProteinID:
XP_053185130
LinkDB
All DBs
Position
11:complement(14582266..14603648)
Genome browser
AA seq
806 aa
AA seq
DB search
MDNNVPVQAMDWKNTKEAVSNFRRLLLCSKCLDIMTEPVCLGMCEHLLCRPCAGSRVGDG
CVVCHSPAWVKDIQINRQLSSITQLFCGLESLLNPKEQSGSPLAEIQAQTENSVIKHKKN
FKIWLSPRSRKVRCVVEKPSEVTVPDSRSSGETAAAQPDAVAAQCKDLSVFNFTSSSQDS
GSDSCSQKCHTNNRNKKNTLIKKNAANRKASKQGTTRTTQKQTKKKMLEAINQQWGITDG
IHALTEQEQPCAEGARRSSKRVSFLNPAVTSDEPQLEVSKGSPNELCLSSGRSNMRDSPS
GGSIIVLNNQAQLCENMSNSVIQHDTLSANDPIMTADLEKQDNESPRSSKRSRVEEKVIT
LETTPKRPRVSPGRRRKSPGQKSPAVLNPRSLISPRREKNAITPRKEQEESPSDPAIAGR
KSPSTPTSVGRPTTGSPAVMKRNHKGETPLHLAAIKGDVEAVKELLDQGADPNLKDNAGW
TPLHEACNLGHLGVAEVLVSRGALLNTPGYENDSPLHDAVRNRHPAIAKLLLQLGALQNV
LNLHGKRPADYAVSPEMLEIFQEASEGTRNDKTSLSPSAGLSVGNDCVRRDESIVLLTSK
LSQEKQHQLVKLGQLLGGRMTDTFSGSVSHVVVPEGPMPTTYSSLLGLLAGCWIVKYSWV
VACLQASKWIPETEHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGTFNMPTKDELTKLLR
EGGGKLLSRQPKPDSDVTQTLNAAAYHALPGSDQALCTQYIIFDPQGPHKPAVVRRGKVW
SAPSTWLIDCIAAFCLLPVPDPQTLI
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggataataatgtacccgtacaggcaatggactggaagaacaccaaggaagctgtttca
aactttcgacgcctgctgctttgctcaaaatgcttggatataatgacagaacctgtgtgt
ctaggaatgtgcgaacatttgctgtgcaggccctgtgctggctcccgggtaggagatggc
tgcgtggtttgtcacagtcctgcctgggtgaaagacattcaaatcaacaggcagctcagc
agcatcacacagctcttctgtggtttggagtccctgctgaatcccaaagaacagtcaggc
tcccctctagctgagattcaagcacaaactgagaactctgtcattaagcacaagaagaat
tttaagatctggttaagcccccgtagccgaaaggtacgttgcgtggtggagaagccttca
gaggtcactgtaccagacagcaggtcttctggagaaacagctgcagcacagccagatgct
gtagccgctcaatgcaaggacctgtcagtttttaatttcacgtcatcctcccaagactct
ggctctgactcttgttctcagaaatgccacactaacaacagaaacaagaagaacacatta
atcaagaagaatgctgccaacaggaaggcatcaaaacaaggaaccaccaggaccacacaa
aaacagaccaagaagaagatgctggaggccataaaccagcaatggggcattactgatggt
atacatgccttaacagagcaggaacagccctgtgctgaaggggcaaggaggtctagtaaa
agggtttccttcctaaaccctgctgtcacatctgacgagcctcagcttgaagtgtcaaag
ggtagtcctaatgaactctgcctcagctctggcaggagcaacatgagggacagtccctca
ggaggcagcatcattgtactcaataaccaagcccagctttgtgagaacatgtcaaacagt
gtcattcagcatgacacgctgtctgcaaacgaccccatcatgacggctgatcttgagaaa
caggacaatgaatctccccgctcctcaaaacgatcaagagtggaggagaaggtcatcacc
ttggagactacaccaaaaaggcccagggtctccccgggtcggaggagaaaatcacctggt
cagaagtctccggctgtccttaaccctcgatctttgattagtcctaggcgtgaaaagaat
gccatcacccccagaaaagagcaggaagagagcccctctgacccagctatcgcaggtaga
aaatctccctctactccaacgtcagttggcaggcccaccacaggaagccctgcagttatg
aaaaggaaccacaagggagagaccccactgcatctagctgctataaagggagatgtagag
gctgtcaaggaactactggaccagggggctgaccccaacctgaaggataacgctgggtgg
acacctctgcatgaggcgtgtaatctgggtcacctgggagttgcagaggtgttggtctca
aggggagccctcttaaatacacctggctatgaaaatgactctccgcttcatgatgctgtg
aggaacagacacccagccatcgccaaattactcctgcagcttggagccttgcagaacgta
cttaatctgcatggtaagcggcctgcagattacgcagtgagtccagagatgctggagatt
ttccaggaagcctcagaaggaacccgaaatgataaaacttcacttagcccctcagccggg
ctctctgtggggaacgattgtgtgaggagggatgaaagtatcgtgcttctgaccagcaag
ctgtcacaggaaaaacagcatcaactggtcaaactgggacagctactgggagggaggatg
acggacaccttttctggctcagtgagccatgtcgtggtgccagaaggacccatgcccacc
acctactcaagccttctgggtctccttgctggctgctggattgtcaaatacagctgggtg
gtggcatgtctgcaggcaagcaagtggatccccgaaactgagcacgaagcaggagaaggg
ccccagcgaagtcgcatcaacagatgtagcttgcttccaccactcttcgacggctgtttc
ttcttcctcctgggaacctttaacatgcctaccaaagacgagctcaccaagctgctccgg
gagggaggtggtaaactactgagccggcagcctaagcctgacagtgatgtgactcaaacc
cttaatgctgcagcctatcatgccctcccaggatctgaccaggccctctgcacccaatac
atcatctttgacccccagggccctcacaagccggcagtggttaggcgtggcaaggtatgg
tcagctccctccacctggctcatagactgcatcgcagccttctgcctcctccctgtgcca
gaccctcaaacattgatttaa
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