Scomber japonicus (chub mackerel): 128368395
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Entry
128368395 CDS
T09718
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128368395 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128368395 (xrcc5)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
128368395 (xrcc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
128368395
NCBI-ProteinID:
XP_053185164
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Position
11:complement(18134872..18147683)
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AA seq
726 aa
AA seq
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MAGSKSALVLCMDVGFSMSNSAPGEEPPFELAKKVIQKFVQRQVFAETKDEMALVLFGTD
STRNSLDKDSQYQNITLHRHLMVADFELLEEIENQIHPESQQADWLDALVVCMDLLQTET
KGKKYDRLNIVLLTNLSTQASSEHLDVIIENLKKADITLQFFLPFPAEDDEEEGGGDADR
GSPSHPGMGKGLSKEQKSGLDMVKHVMLSLDEEDGLDQIYTFRNAIEQLCMFKRIERRPM
AWPCQLTIGSALSIRIVGYKAVTEERLKKMWVTVDAQTNHKEDIKRETVYCLDDDNETEV
QRDDTIQGFRYGSDIVPFSKVDQEQMKYKHDGKCFAVLGFAKQNMIHRHQFMGNQVVKMF
APKDDEHAGVALSAVIRALDELKMVAIVRYAYDRRSNPQVGAAFPCIKQNYECLMYVQLP
FMEDLRQFTFPSLENNKKFIPSDTQLSAVDTLIDSMMLVEEDEDGQQKDMFKVHKLPNPA
FQRHFQCLHHRAVNPSTPLPPMEDWVKAALERPEVISERCQALLDEMKKKFPLTQVEKKK
KLKTSAQIFGKDSEEPDAKKAKGDEEEEEYNLADIAEGSVTSVGSVDPARDFRTLVKQKN
LPFGDVCQQLTHRIEQLLSNKNTPYFMKSITCIQAFREQSVKLGNAELYNSYLQSLKRSI
PNRGLEVFWDLLVQDAVSLISKDEVEGSTVSKNEANQFLLAEEKQEEATAQTVNDTGDVD
DLLDMM
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcaggatccaaatctgcgttggtgctgtgcatggacgtgggcttctccatgtccaac
tctgccccaggggaagaacctccatttgaacttgccaaaaaagtcattcagaagtttgtc
cagcgccaggtttttgcagagactaaggatgaaatggctttggttctgttcggcaccgac
tcaaccaggaactcactggacaaggacagccagtaccagaacatcacactgcatcgccac
ctaatggtggctgattttgagctcctagaggagattgagaatcagatccatccagagagt
cagcaggctgattggctggatgctctggtcgtctgcatggatctccttcagacagaaaca
aaggggaaaaagtatgatcgtctgaacatcgtcctgctgactaacctcagcacccaggcc
agctcagagcaccttgacgtcattattgaaaacctgaaaaaagctgacatcacattgcag
ttctttttgccttttcctgcggaggatgatgaagaggagggtggaggagacgcagacaga
ggctctcccagtcacccaggcatgggcaaaggtctgtccaaggaacagaagagtggcctg
gacatggtgaaacatgtcatgcttagccttgatgaagaggatggcctcgatcaaatttat
accttcaggaatgccattgagcagctttgtatgttcaagcgcatcgagaggagacccatg
gcctggccctgtcagctgaccattggcagcgctctctccatccgcatcgttgggtacaaa
gctgtgactgaagagaggctgaagaaaatgtgggttacagtcgatgctcaaaccaaccat
aaggaagacatcaagagagagactgtttactgtctggacgatgacaatgagacagaggtt
cagagagatgacaccattcaaggttttcgctatggaagtgacattgttccattctccaaa
gtggatcaagagcagatgaaatacaagcatgatgggaaatgctttgctgttttgggcttt
gccaaacagaacatgattcatcgccatcagtttatgggaaatcaggtcgtcaagatgttt
gctccaaaggatgatgagcatgcaggagtggcgctgtctgctgtcattcgggcgctggat
gaactgaaaatggtggccattgtacgttacgcctacgaccggcgcagcaatcctcaagtt
ggagcagctttcccttgcatcaagcagaactatgagtgtctcatgtacgtccagctgcca
ttcatggaagacctcagacagtttacatttccttctcttgaaaacaataagaagttcatc
ccctcagacactcaactgtctgctgtcgacactctcattgactccatgatgttggtagaa
gaagatgaggatggacaacaaaaggacatgtttaaggtccacaaacttcccaaccctgct
tttcagaggcacttccagtgcctgcaccatcgggcagtgaaccccagcacccctcttccc
cccatggaagattgggtaaaggcggccctcgagcgccctgaggtaattagtgagcgttgc
caagctctactagatgagatgaagaagaagtttcctctcacacaagtggaaaagaaaaag
aagctgaagacaagtgctcagatttttggcaaagactcagaggagccagatgccaagaaa
gcaaaaggagacgaagaagaggaggagtataacctggctgacattgctgaaggctctgta
acttcggtgggaagcgtggatccagcccgagatttccgtactctggtcaaacaaaagaat
cttccattcggagacgtctgtcagcaactgactcacaggatagagcagttgcttagcaac
aagaacacaccttacttcatgaaaagcatcacctgtatccaggctttcagagagcagtct
gtgaagctggggaatgctgagctgtacaacagctacctccagtccctgaaaagaagcatc
ccaaacagagggctagaagtcttctgggacctgcttgttcaagatgccgtatctctgatc
agcaaggacgaggttgaaggaagcactgtatccaaaaacgaagctaatcagtttctgctg
gctgaggaaaagcaagaggaggcgactgcacaaacagttaatgatactggggatgttgat
gacttgctggacatgatgtaa
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