Scomber japonicus (chub mackerel): 128368410
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Entry
128368410 CDS
T09718
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sjo04147
]
128368410 (col18a1a)
00535 Proteoglycans [BR:
sjo00535
]
128368410 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
sjo00536
]
128368410 (col18a1a)
Exosome [BR:
sjo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128368410 (col18a1a)
Proteoglycans [BR:
sjo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128368410 (col18a1a)
Glycosaminoglycan binding proteins [BR:
sjo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128368410 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
128368410
NCBI-ProteinID:
XP_053185184
LinkDB
All DBs
Position
11:complement(7563386..7602661)
Genome browser
AA seq
1424 aa
AA seq
DB search
MRIQFGVLFFFTLWVVYCDAWFWSSSGTATTTLAPSVEHEGSGSAGSGELPSDNIGAEII
DEGHGPHKAAQTWDGPTDAPRLTAPVPTRQLQNQRTSERGRAEIRSHTRKPGNSTSSLEE
ESGVSLLQLIGEPPPNEITRINGPDNSPAYVFGPDANTGQLARAHLPSPFYRDFALIFNL
KPTSNKGGVIFSVTDAAQQIMYVGVKLSAVQGGNQNVILYYTEPDSQQSYEGARFLVPSL
KDTWTRFAIAVRDDKVMFYLNCDTDPQVVRIERSPDEMELEAGAGVFVGQAGGADPEKFL
GVIGELRVVGDPRAAERHCEEDEDDSDMASGDGSGYGETRPDTRKPTWTTTPASSRPIQQ
PPVSRKEEVSVTRETGPIGARGEKGDRGDRGEKGDRGPIGAKGDAGSGSGSSSRGGARGE
KGEPGETGTKGNAGFGYQGTKGEPGVPGPPGPPGPPGTTSDISTGSDGTVVSRIPGPRGP
PGPPGVSGPAGSPGADGEPGDPGEDGKTGAQGPPGFPGTPGDPGLKGDKGDRGEGQPGPR
GLPGPPGPPGPGLRSTFVDMEGSGFPTSESSRGLPGPPGPPGPPGPPGPTTTGTALSSGA
FGPPGKDGAPGQPGLPGMPGTDGSPGRSGPKGEKGDSGELGLPGTIGEKGARGDPGLPGS
AGDPGLAGLPGPLGPVGPPGPPGPPGPSYRVGFDDMEGSGGFLSNGLPGVRGPEGSQGPP
GLPGLPGKPGLQGMPGLKGMEGTVGRDGQPGLDGFPGPQGPKGDTGDKGETGEPGRDGVG
LQGPPGPPGPPGKVIYQPDNFDGVSGRVGAQGGPGLPGQAGFPGPIGPKGDRGDPGPAGY
GLKGEKGEPGLIIGPDGNPLYLDGATGVKGDRGPSGPAGPPGPYGPTGLKGEIGMPGRPG
RPGVNGYKGEKGEPSGGAGFGFPGVPGPPGPPGPPGPAFPINRFNGYDDTSRNYPGNKGE
KGDIGPPGIPGLSPFNDIYTLKNELKGEQGGPGVKGEKGEPGGGYYDPRYGPSGSPGKPG
LPGPKGDSIMGPPGPQGPPGQPGIGHDGRQGPPGPPGPPGVPGSYSQAGGYRPNHPVSLP
GPPGPPGPPGHPGSSSGVTVLRTYDTMIATARRQEEGSLIYVIDRADLYLRVRDGLRQVM
LGEYSPFFRDLENEVAEVQPPPVIVAHNGAGHYSKEVSAARPIQPPPQPPVEPRYPPQYD
PRFPDPRHTGHTDGRTATHNDNRYAVTPQRRPNPPVVQPAVHVDSSASGLHLIALNAPQT
GNMRGIRGADFLCFQQARAIGLKGTFRAYLSSKLQDLYTVVRRSDRDSIPIVNLKDQVLF
SSWESIFSDDASKMRENVPLYSFDGRDILRDSAWPEKMIWHGSSKKGHRQTDHYCETWRA
GDRAVTGLASSLQSGHLLQQSSSSCSSSYIVLCIENALTTSSKK
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgaggatccagtttggagttttgtttttttttaccctgtgggtggtctactgtgatgct
tggttctggtctagtagtgggactgctaccactactttggctccatcagtggaacatgag
gggtctggtagtgcaggtagtggagaactgccatcagacaatattggagctgagatcatt
gatgaaggacatgggccccataaagctgcacagacttgggatgggcctactgacgctcct
cgactgaccgctccagtacctacaaggcaactacagaatcaacgtacatcagaaaggggc
agagcagagattcggtctcacacacgtaaacctggtaatagcacatcttcattagaggaa
gagagtggagtctccctgctgcagctcattggggaacctcctccaaatgagatcacccga
atcaacggaccagacaacagccccgcctacgtcttcggccccgatgccaacacgggccag
ctggctcgcgcccacctgccgagcccattctaccgagactttgccctcatcttcaacctg
aaacccacctcaaataagggaggtgtcatcttctctgtcacagatgcggcacagcagatc
atgtatgtgggtgttaaactgtcagccgtacagggcggcaaccagaatgtcatcttgtac
tacacagagcccgactcgcagcagtcgtacgagggggccaggttcctcgtgccctcgttg
aaggatacctggactcgttttgccatcgctgtgagggacgacaaggtgatgttctacctc
aactgcgacacagaccctcaggtggtgcgtatagagaggtcgccggatgagatggagctg
gaggccggcgctggggtctttgtcgggcaagctggaggggccgatcctgagaagttcctg
ggtgtgatcggtgagctgagggtggtgggagaccctcgtgctgctgagaggcattgcgaa
gaagatgaagatgactccgatatggcttcaggagacggaagtggctacggagaaaccaga
ccagacacgaggaaacctacgtggacgactactcctgcatcttcccggcccattcagcag
ccaccggtgtccaggaaagaggaagtgtcagttacaagagagacagggccaattggggct
agaggagaaaaaggtgaccgaggggatagaggagagaaaggagatagagggccaattggg
gcaaagggagatgcaggttcaggctctggctccagttcacggggtggagcccgtggagag
aagggagaaccaggggaaacaggaacaaagggcaatgcaggctttggctaccaaggaacg
aaaggagaacccggcgttcctgggccccctggtccccctgggccccctggtactacgtcc
gatatttcaactggcagtgacggcacagttgtttcgagaatccctggcccccgaggacca
cctggaccaccaggtgtctcaggcccagcaggttcaccaggagctgatggagagccaggt
gatcctggtgaggatggaaaaactggtgctcaaggacctccaggcttcccaggaactcca
ggtgaccctggactcaaaggagataagggagaccgtggagagggacaacctggccccagg
gggctcccaggtcctcctggacccccaggacctggactcagatctacttttgtggacatg
gaaggctcagggttccccacttcagagtctagtcggggactgccaggtcccccaggtccc
cctggtcctcccggtcctcccggtcccactacaacaggtacagcattgagttctggggca
tttggaccaccaggaaaggacggggcaccaggtcaaccaggtttgcctggtatgccaggt
actgatggcagcccaggacgttctggtcccaaaggagaaaagggtgattcaggcgagctg
ggtcttccaggaacaattggagagaagggggctagaggagatcctggtttaccgggatca
gcaggagaccctggactggctggtctgcctggaccactgggaccagttgggccacctggg
cctcctggacctcctggaccaagctatcgtgttggatttgatgacatggagggctctgga
ggatttttgtctaatggacttcctggtgtcagaggaccagaaggaagtcagggtcctcct
ggcttgcccggacttccaggtaaacctggtttgcaaggtatgccaggtctaaagggcatg
gagggtactgtgggaagagatgggcaaccaggattggatggcttccctggacctcagggg
ccaaaaggtgacacaggcgacaaaggagagacgggtgaaccaggccgtgatggagtcggc
ctccaaggcccgccaggtccacctggaccgccaggaaaagtcatctaccaacctgacaat
tttgatggtgtttctggcagagttggggctcagggaggacctggtttacctggtcaagct
ggattccctggtccgattggaccaaagggtgaccgaggagacccaggcccagcaggttat
ggactgaagggtgagaagggtgaaccaggcttaataattggtcctgatggaaatcctctg
tatctggatggggcaacgggtgtgaagggagatagaggaccttctggaccagctggaccc
cctggcccgtatggacctactggattaaagggtgaaattggaatgcctggaagacctggt
cgtcccggagtaaatggatacaagggtgaaaaaggagagccatcaggaggtgctggcttt
ggcttcccaggagtccccggccctcccggacctcctggacctcctggaccagcctttccc
attaatcgcttcaatggctatgatgatacttcgaggaattatccaggaaataaaggggag
aaaggagatattggacctccagggatcccaggattgagcccatttaatgatatttacaca
ttgaagaatgaattgaaaggagagcaaggaggcccaggagtgaagggagaaaagggagag
cctggtggtggatattatgacccgcggtatggcccatcagggtctcctggcaaaccaggc
ctaccgggaccaaagggagattctataatgggccctcctggaccacaaggaccaccagga
caaccagggattggtcatgatgggcgtcaaggccctccaggtccacctggaccaccaggt
gtgccagggtcttactctcaagccggaggatacaggcctaatcaccctgtcagtctacca
ggacctcccggtcctcctggaccccctggacatccaggttcatcatctggggtcacagtt
ttgaggacatatgacaccatgattgctactgccagacgccaagaggagggcagtctcatc
tacgtcatagacagggcagacctgtatttaagagtccgcgacggactgcgacaagtcatg
cttggagagtacagtcccttcttcagagatctggagaatgaggttgcagaggtccagcct
ccacctgtcatcgttgcccataacggggctggccattactccaaggaagtttctgctgca
cgacccatccagcctccaccacaaccacctgtagaacccagataccccccacagtatgat
cccaggttcccagatcccagacacacgggtcacacagatggaagaacagccacccacaat
gataacagatacgctgtcactccccagcgacgccccaacccacctgtggtgcagcctgca
gtgcatgtggactcatctgcatcaggactacatctcatcgccctgaacgcccctcaaact
ggtaacatgcgaggaattcgtggggcagacttcctgtgcttccagcaggcccgtgccatt
ggtctgaaaggcaccttcagagcttacctgtcctccaagcttcaagacctctacaccgtc
gtccgcaggtcggacagggacagcatccccattgtgaatctcaaggatcaagtgctgttt
agcagttgggagtccatcttcagtgacgacgcaagcaaaatgagagagaatgtaccactt
tactcctttgatggcagagatatcctcagggacagtgcatggccagagaaaatgatctgg
catggatcaagcaagaaaggccaccggcaaacagaccactactgcgaaacatggcgggca
ggcgaccgcgctgtgacgggtctggcatcatcactacagagtggccacctcctgcagcaa
agctcctctagctgctccagctcctacatcgtcctctgcatcgagaacgccttgacaaca
tcctccaaaaaataa
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integrated database retrieval system
