Scomber japonicus (chub mackerel): 128368430
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Entry
128368430 CDS
T09718
Symbol
ranbp2
Name
(RefSeq) RANBP2-like and GRIP domain-containing protein 8
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128368430 (ranbp2)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128368430 (ranbp2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368430 (ranbp2)
03110 Chaperones and folding catalysts [BR:
sjo03110
]
128368430 (ranbp2)
04121 Ubiquitin system [BR:
sjo04121
]
128368430 (ranbp2)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128368430 (ranbp2)
Chaperones and folding catalysts [BR:
sjo03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
128368430 (ranbp2)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
128368430 (ranbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
IR1-M
Pro_isomerase
Zn_ribbon_RanBP
WH1
TPR_16
TPR_1
TPR_2
TPR_CcmH_CycH
ARM_TT21_C
DUF1681
Motif
Other DBs
NCBI-GeneID:
128368430
NCBI-ProteinID:
XP_053185216
LinkDB
All DBs
Position
11:complement(12437836..12466481)
Genome browser
AA seq
3030 aa
AA seq
DB search
MRRSKTEVDRYVSSVQSSSPSLKEKPVKGFLFAKLYFEAKEYELAKRHVSEYLKVQERDP
KAHKFLGQLFEREGEINKAVGCYKRSVDLNPAQKDLVLKVAELLVNKEECDSKADFWVEK
AAKLLPGNPAVFNLKERLLNRQGQQGWNQLSDLLQAELAARPADTHVNVKLVQLFCQDGR
LDEAVKHCLAVERRGMLRHSLDWYTVVVHTLQEYLAQPSIASDEKMCRCLQRELLLAHCS
LLRITLSGSSVQPSIDALRDFDQAMQTLSSIAGRHADYLCEVFVEMRGHLYLHVATLVLK
LAQDQQKTWRAVIDLAALCYLLAYQVPRPKSKVTKRDQSGPQLLELLANDRLSQAGHMLL
NLSTDASTLIREVVEAFGNRCGQDSLFELLFGQQASSASSFIANDDIRSIKAMTPQISQL
AGWDAGSILLHAGDLQHLSWLGLQWTLLGQRPELRDWLQQLFPRLTLETSKLDTNAPESI
CLLDFEVFIYGVVFCSHCQLQETAKISSAVNQQQQQQLYEPRCLPLPLLRLLTTDRQREW
WDAIYSLIHKQAAPGMSAKLRMTVQHGLKTLRAGEKNGLQPALAIHWAQCLSQTVDGLKS
YYDQKEYISRSVHYWKVVLPLLDRIKNRHSIPEPLEPLFIHFRSKDIQISSVKGYEEEAQ
ITYAVLLDIEGKTEEAIAALEIINNMSSAWHLAQIYQRLSEEASNGVEETQDRCITFLRK
FRTYLAKIYNANVDDFDKLPVSMEEVYDLLNDVNQQLGENGEDMDEGEEEDKVGRGPAHS
SPAHPIETSATISHVKFSTPSPNKSIVSPSKRHLISPKTPPHWVEDQKSLLQMLCQQVEA
LKNEVHDLRHNSSVSASSPHHKMYGESYGAEGLQEPFTPVQSYHGAPLTVATTGPSVYYN
QSPAYNSQYLLRTAANVTPTKGPMYGMNRMPPQQHMYAYQQPTHTPPLQTAPACIYPPQE
QVFGAPLRFESPATSLLSPYSEEYYGQSVPQQTTNPPLPEPGYFTKPSVVPVQPQKSIVG
KPMNFGKLSFSQQAPAEVPKVPSFGSSAIAQSTPSAAFKFNSNFKSNDGDFTFSASQAKH
SESLLGLLTSDIPTKTDTLPEKLTGQEQPSSQTGIFTFGNANSNGFSFADAAQSTNTGSG
FGNVDHPFKFGDPKPVFGLATSAAEEERAADSDNDSTHAEEDEDGPHFEPIVPLPDKVDV
KTGEEEEEEMFCSRAKLYRFDTETKEWKERGIGNVKILKHSTKGKVRLLMRREQVLKICA
NHYINADMLLKPNAGSDKSWVWNAIDYADEEPKPEQLAIRFKTVDEASLFKAKFEEAQKI
VLRSSEKQNQQEKKESLPASNPSSTLAAQFALKEGEWDCDVCCVRNKPQDMKCAACQTAN
PNSSSSSKPDIQAANETKASPFTFKFGTDSSKPTSSGSPFTGFGGFGSSVSSAFTFGTST
SKPADTVTSAFGSGFGVQFGKKPGQWDCGTCSAANEASADSCVSCKALKVSPKTTATEQV
APAATAPVVKPSDMVDTGFAAQFGKKPGQWDCDVCEVRNEASADKCVACNTPNPTAKSKE
GAPVASSLSTALVMPGFGADFAKKDGQWDCNSCLVRNDASATECVSCHTPRSLEEMFAKK
DGEWDCDMCLVRNDASANKCAACQTPNPNAKSVTSAAPSASNFKFTFGDKSSSSQPASTG
FTMPFATSSTFQFGQNKDTSSAASFKFEVPQSGSTTTSSSGFSFSMPIPSDGFKFGIQEA
TKETSSTDNETAPSASSFLKSIADKHKEKEDVSTPLIDQTGKDQNPLISGKTDTFSFADL
AQTTGGDYQFGQTDPDFQGFSGAGEQLFSAFPATPTKTDATNDLEEDGMYKTEENDDIQF
EPVVQMPDKVDLVTGEEDEVVLYSQRLKLFRFDSNTSQWKERGVGVLKFLKNTSNGRLRV
LMRREQVLKVCANHWINTTMNLKPLAGSDRAWIWMANDFSDGDAKPEQLAAKFKTPELAE
EFKEKFEECQRLLLDIPLQTPHKLVDTGRTAHLIQKAEEMKSGLKDLKFFLTDEKTKIKD
DESQQEPSSLVMKSHGETTGPTLEWDNYDLRDEALDTTADSSVYASPLASSPLRKNLFRF
GESTAGFNFSFQPGISPSKSPAKLNQSRASVGTDDEQDVTQDEERDGQYFEPVVPLPDLV
EISTGEEDELIVFSHRAKLYRYDKGLSQWKERGIGDLKILQNYNTKRVRLIMRRDQVLKI
CANHWITAAMKLEPMKGAEKAWVWSALDFAEAGESNIEQLAVRFKLLETANAFKQVFEEA
KVAQEKGELMTPVTPRVATPQDSGPTTSEKGATPVCGKAAIAVLEETTKERTDLSTDSQP
CTAGSQSPGNPSKGVVSPPKFVFGTQSLQKIFGSPKSDDGECSLKPKDSGRPTKVPPAQP
AFKIPEKGQAGARSDDDDDEVEIVYIREPTAEQAALAKKLLLPLTFFCYQNEPGYTSDDQ
TDDEDYESAVKALNGKLYPDPPERKAAACGDESDCQVIWEKKPTPEEEEKAKSLQLPPTF
FCGLSTTDSDPDHDKSEDFETEVRRAQQDLEAEFNKPDMVSSSPAEETTSDPSSDPSSSS
VEATVSTSTPEDQTSDQPADTQSEAPRSSSPIDLSTKKSQEPEPNTETSAATTATTTSQD
SSGFGFNSLGGFSFADLANKTDGFAFGANDSNFSWANAGATVFAGPAPPKNDGDVEGSDE
EEGPNNVDIHFEPIVSLPEVETKSGEEDEEILFKERAKLYRWDRDLGQWKERGIGDLKIL
FHPAKRFYRILMRREQVLRVCANHTITEAMELKPMNASANALLWTATDYSDGDGAVEQLA
AKFKTPEIAESFKKTFCKCQSSMGQSSDDLSSVFPPQMSRIQEHSRDSNPKVFLTVTADA
ELLGTITIELFSHIVPKTAENFKVLCTGEKGFGLRDSIFHRVIPDFMCQGGDITKSDGTG
GKSIYGSQFEDENFDVRHTGPGILSMANRGRDTNNSQFFITLKKAEHLDFKHVAFGWVRD
GMDVVQQMGALGTKGGAPSKKLVITDCGQL
NT seq
9093 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggagtaagacagaagtggaccggtacgtttcctccgtacagagctcctctccc
tccctcaaagagaagccagtcaaaggatttttatttgcaaaactctactttgaagcaaag
gagtatgaacttgcaaaaagacatgtatcagagtatctcaaagtccaggagagggacccc
aaagcacacaagttcctcggacagctcttcgagagagaaggagaaatcaacaaggcagta
ggatgttacaagcgatcggtggacttgaacccggcccagaaagacctggtgctgaaggtg
gcagagttactggtcaacaaggaggaatgtgacagcaaggcagacttctgggtggagaag
gctgccaagctgctgccaggaaaccctgctgtctttaacctgaaggagcgtctgttgaat
cgtcaaggtcagcagggttggaaccaactctctgacctcctccaggccgagctggcagcg
cggccggctgacacacatgtcaacgtgaagctggttcagctgttctgtcaggacggtcgg
ctggatgaggccgtaaagcattgcctggctgttgagagaaggggcatgcttcgccacagc
ctggactggtacaccgtggtggtgcacacactgcaggagtatctggctcagcccagcatc
gccagtgatgagaagatgtgtcgctgtctccagagagagctgctattggctcactgcagc
ctgctgagaatcacactgtctgggagcagtgtgcagcccagcattgatgcactcagagat
tttgaccaagctatgcagaccctgagtagcatcgcaggccgccatgcagactatctttgt
gaggtgtttgtggagatgcgaggtcacctctatttgcatgttgccacattagtcctgaag
ctggctcaggatcagcaaaagacgtggagggccgtcattgacctggctgcactgtgctat
ctgctggcataccaggtccccagaccaaagagtaaagtgaccaaaagagaccagtcaggg
cctcagcttctggagctgctggcaaacgaccgactgagtcaggctggccacatgctgctc
aatctgagcactgacgcgtccaccttgatcagagaggtggtggaggcgtttgggaaccgt
tgcggtcaggactctctgtttgaactcctctttggacagcaggcctcttctgcatcttcc
tttattgccaatgatgacattcgttccataaaggcaatgactccacagatctctcagcta
gccgggtgggatgctggctccatcctgctccacgccggtgatttgcaacatttgagctgg
ttggggttgcagtggacccttctgggtcagagaccagaactgcgggattggctgcagcag
ctctttccgaggcttaccctggaaacctccaaactggacacgaatgcaccagagtccatc
tgcctgctggactttgaggtgtttatatatggtgtggtgttctgtagccattgtcagctt
caggagacggcaaagatcagcagtgcagtgaaccagcagcagcaacagcagctctacgag
ccacgctgcctcccccttcctcttcttcgcctcctgaccaccgacagacagagggagtgg
tgggatgccatctacagcctcattcacaaacaagctgctcctggcatgtcagcaaaattg
cgaatgactgtgcaacatggactgaaaactctgagggctggagaaaaaaatgggctccaa
ccagcactggctattcactgggctcaatgtctcagccagacggttgatggactgaagtca
tactatgaccagaaggagtacatcagccgcagtgtccactactggaaagtcgtccttcca
ctgttggacaggatcaaaaacagacacagtatacccgaacccctcgaaccactcttcata
cactttcgctccaaagatattcagatctcatctgtgaagggatatgaagaggaagcccaa
atcacatatgcagttctccttgacattgaaggcaagacagaggaggccatcgctgccttg
gaaatcatcaataacatgtcgtccgcctggcatctggctcagatctaccagcggctgtca
gaggaggccagcaatggggttgaggagacacaagacaggtgcatcacttttctgaggaag
ttcaggacctacttggccaagatctataatgccaatgtagatgactttgacaagttgcct
gtgtccatggaggaagtttatgaccttctgaatgatgtgaaccaacaactgggggagaat
ggggaggacatggatgaaggagaggaagaggacaaggttggaagaggaccagcccattcc
agccctgctcatcccatagaaaccagtgccaccatatcccacgtcaaattttccactccc
tccccaaataaaagcattgtctctccttccaaaagacacctgatttctccgaagacccca
cctcattgggtggaggaccagaaaagtctccttcagatgctgtgtcagcaagttgaggct
ctcaagaatgaggttcatgatctgagacacaactcttcagtgagtgcaagttctcctcat
cacaagatgtatggagagagttatggagctgagggcctacaggagcctttcaccccagtc
cagtcctaccatggggcccccctaacggttgccaccacaggcccttctgtgtactacaat
caatctccggcatataactcacagtatctcctgcgcacggcagcaaatgtaacccccacc
aagggtccaatgtatggtatgaaccgtatgccacctcagcagcatatgtatgcctaccag
cagcccacacatacacctccactgcagacagccccagcctgcatttaccctcctcaagaa
caggtctttggtgcccctcttcgatttgaatcaccagccactagccttctatcaccatat
agtgaagaatattacggccagagtgtaccccaacaaaccacaaaccctccattacctgaa
cctggttacttcaccaaaccgtctgtcgtccctgttcagccacaaaagagcattgtgggg
aaacctatgaattttgggaagctctccttcagccagcaggcacctgctgaagttcccaaa
gtgcctagttttggatcaagcgcaattgcccagtcaacaccctcagctgcgtttaaattt
aactccaactttaaatccaacgatggagatttcactttctctgcttctcaggccaagcat
agtgaaagtttgcttggtcttcttacgtcagacattcccactaaaacagatactcttcca
gagaagctcacaggtcaagagcagccctccagccaaacgggcatcttcacctttggcaat
gcaaattctaatggcttctcctttgctgatgcagcacagagtacaaatactggaagtggg
tttggaaacgtggaccatccatttaaatttggggaccccaagccagtgttcggtctggcc
acgtctgcagcagaagaggaaagggcagcggacagcgacaatgacagcacacatgctgag
gaagatgaggatggtcctcactttgaacccattgtaccccttccagacaaagtagatgtg
aaaacgggtgaggaagaagaggaggagatgttttgcagtagggcaaagctgtatcgattt
gacacagagacaaaagagtggaaggagcggggcattggaaacgttaaaatcctaaaacac
agcactaaagggaaggttcgcctcttaatgaggagggaacaggtccttaagatctgtgcc
aatcattatatcaatgctgatatgttactgaaaccgaatgctggctcggacaaatcctgg
gtctggaatgccattgattatgcagacgaagagcccaagcctgagcagctagccatccgc
ttcaaaaccgtagatgaggcatctcttttcaaagccaagtttgaggaagctcagaaaatt
gtgttaagatcatcagaaaagcaaaatcaacaggagaagaaagagagcttaccagcttcc
aatccatcatcaacattggcagcacagtttgcacttaaagaaggggaatgggactgtgac
gtgtgctgtgttagaaataaaccccaagatatgaagtgtgctgcttgtcaaactgccaat
ccgaattcttcatcttcatcaaagccagacattcaggctgcaaatgaaaccaaagccagt
ccatttactttcaagtttggaactgactcatcaaagcccactagttctggctctccattt
actgggtttggtggttttggatcttccgtatcctctgcatttacatttggcacaagcacc
tcaaaacctgctgacacagtaaccagtgcatttggttctggctttggggttcagtttggc
aagaagccagggcagtgggattgtggcacatgttctgcagcaaatgaggcctctgcagac
agttgtgtttcttgtaaagctctgaaagtgtcacctaaaacaactgccacagaacaagtg
gcaccagctgcaacagcacctgtagttaaaccctcagatatggttgacactgggtttgct
gcccagtttggcaagaagccagggcagtgggactgtgacgtatgcgaagtaagaaatgaa
gcttcagctgacaaatgtgttgcctgtaacactcccaaccctactgctaaatcaaaagag
ggtgctccagttgcatcctccctgtcaacagcattagttatgccaggatttggagctgat
tttgcaaaaaaggatggacagtgggactgcaattcctgcctggtcagaaatgatgcatca
gctactgaatgtgtttcttgccacacccctcgttctttagaagaaatgtttgccaagaag
gatggagaatgggactgtgacatgtgtctggtgagaaatgatgcctctgccaataagtgt
gctgcttgtcagacaccaaatcccaatgctaaaagtgtcaccagtgctgctccctcagct
tccaactttaagtttacctttggagacaagagttcatcaagccagccagctagtactgga
tttacaatgccttttgcaacaagtagcacttttcagtttggtcagaacaaagataccagc
tcagctgcttctttcaagtttgaggttcctcaatctggatctactaccacaagttcttcg
ggcttctctttctcaatgcccattccatctgatggctttaagtttggcattcaggaagct
acaaaagaaacgtcctcaactgataatgagacagccccatcagcttctagttttcttaaa
agcatagctgacaaacacaaggagaaagaagatgtatctacacccttaatagatcaaaca
gggaaagatcaaaatccattaatttcaggaaaaaccgatacgttcagttttgcagacctg
gcacaaaccactggaggagactaccagtttggccagacagacccagatttccaaggtttc
tctggggctggtgagcagttgttttcggccttccctgcaacacccaccaagacagatgcc
acaaatgatctggaggaagatggcatgtataaaacagaagaaaatgatgatatccagttt
gaaccagtggtccagatgcctgacaaggtggacctggtcacaggggaggaagatgaggtg
gttctttactctcagcgtctcaaattgttcagatttgactctaacaccagtcagtggaaa
gagcgcggtgtaggagtccttaaattcctaaaaaacaccagtaatggcaggctaagggtg
ctgatgagaagagagcaagttctgaaggtttgtgccaaccactggatcaacaccaccatg
aatcttaagcctctggcaggctcagacagggcatggatttggatggccaatgacttctct
gacggggatgctaaaccagagcagttggctgccaaatttaaaaccccagagctcgctgaa
gaatttaaagaaaagtttgaagagtgtcagagacttctcttagacatccctctacaaacc
ccgcacaagcttgttgacacaggtagaacagcccatctcattcaaaaagcagaggaaatg
aagtctggtttgaaagacctaaaattcttcctgacagatgagaaaacaaagatcaaagat
gacgaaagccagcaagagccttcaagccttgtaatgaagtctcacggtgaaaccactggc
cccaccctagaatgggacaactatgaccttagagacgaagcgttagatactactgctgac
tcatcagtctatgcctctcctcttgcaagcagtcccctgagaaagaaccttttccggttt
ggagaatccactgctgggttcaacttcagcttccagcctggcattagcccctccaaatct
cctgctaagttaaaccagagtagagcctcagtgggcactgatgatgagcaggatgtaacc
caggatgaggagagagatggccagtactttgaacctgtggtccccttgcctgatttggtg
gaaatttctacaggggaagaagatgaactaatagtcttcagtcacagggccaaactgtat
cggtacgacaagggactgagtcagtggaaggagaggggtattggagacctcaagatcttg
cagaattataacaccaaacgagtgaggttgataatgaggagggaccaggtactcaagatc
tgtgccaatcactggatcacagctgccatgaagctggaacccatgaagggcgctgagaag
gcctgggtctggagtgccttggactttgctgaagccggagaaagtaatattgagcagctg
gctgtgagattcaaactgctggagactgcaaacgcatttaaacaggtctttgaagaggcc
aaggttgcacaagaaaaaggggaacttatgacccctgtgactcccagagtcgccacacct
caagacagtggacccacaacatcagaaaagggtgctacacctgtgtgtgggaaagcagct
attgctgttctggaagagaccacaaaggaacgtacagatctttccaccgacagtcaacca
tgcacagctgggtctcagagtccaggcaacccctccaagggagtggtgtcgccccctaaa
tttgtgtttgggactcaaagccttcagaagatttttggcagtccaaaatctgacgacggt
gaatgcagtttgaagcccaaagattctggacgtcctaccaaggtgccacctgcacaacct
gcattcaaaatcccagagaaaggccaagccggtgctaggtctgatgatgatgatgatgag
gtggagattgtgtacatcagggaacccaccgctgaacaggctgctttagccaagaaactc
ctgctgcctctcaccttcttctgctaccagaatgaaccaggctacaccagcgacgatcaa
actgatgatgaggactatgagtcagcagtgaaagccttgaatggaaagctctatcctgat
cctccagagagaaaggcagcagcatgtggcgatgagtcagactgccaggtgatctgggag
aagaaaccgacaccagaggaggaagagaaggccaaaagccttcagcttccacccaccttc
ttctgtggcctgagcaccacagacagtgacccggatcacgacaagtctgaagactttgag
acagaagtacgcagggcacaacaagacctggaggccgagttcaacaaacctgacatggtc
tcaagcagccctgcagaagagacaacatcagacccatcatcagacccatcatctagcagc
gtggaggctacagtcagcacatctacaccagaggaccagacctctgaccagccagcagac
acgcagagcgaagctcctagaagcagctctcccattgacttgtcaactaagaagagccaa
gagccagagcctaacacagagacttccgcagctacaactgctacgacaacaagtcaagac
tcctctggcttcggtttcaactcattgggaggcttttcttttgctgacttggccaataaa
acagacggatttgcctttggagcaaacgactccaacttctcttgggcaaacgcaggagct
acagtatttgcaggtcctgcgccacccaaaaatgacggagatgtagaggggagcgatgaa
gaggaaggtcctaataatgtagacattcactttgagccaatcgtgtcactgccagaggtg
gagacaaagtctggagaggaagatgaggaaatcctgttcaaggagcgtgccaagctgtac
cgatgggaccgggaccttggccagtggaaggagcgtggcatcggtgacctcaagatcctc
ttccacccagccaagcgtttctaccgaatcctgatgagaagagagcaggtgctgagagtt
tgtgctaaccacacgatcacagaggcgatggaactcaaacccatgaacgcctcagcaaac
gcactgctttggacagccactgactactcagatggtgatggcgctgtggagcaactggca
gcgaagttcaaaacccctgagatagccgaatccttcaagaagactttctgcaagtgtcag
agcagcatgggccaaagtagtgatgatctctcgagtgtcttcccaccgcagatgtcgaga
attcaagagcactccagagactctaacccaaaagtgttcctcacagtgacagcagatgca
gagctactgggcaccatcaccattgagcttttctcccatattgttcccaagacagcggag
aacttcaaggttctctgcactggagagaaaggcttcgggctgcgggactccatcttccac
agggtcataccggactttatgtgtcagggtggtgacattaccaaaagcgacggcacagga
ggcaagtccatctacggcagccagtttgaagatgagaacttcgacgttcggcacacaggc
ccgggcatactttccatggccaatcgagggcgtgacaccaacaactcgcagttcttcatc
accctgaagaaggctgaacacctggacttcaaacatgtggctttcggctgggtgcgggat
ggcatggatgtggtacagcagatgggagcgctgggcacaaagggaggcgccccctcgaag
aagcttgtcatcacagactgtggacagctctag
DBGET
integrated database retrieval system
