Scomber japonicus (chub mackerel): 128368457
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Entry
128368457 CDS
T09718
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128368457 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368457 (ddx3xa)
03041 Spliceosome [BR:
sjo03041
]
128368457 (ddx3xa)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128368457 (ddx3xa)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128368457 (ddx3xa)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128368457 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
128368457 (ddx3xa)
Spliceosome [BR:
sjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128368457 (ddx3xa)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128368457 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128368457
NCBI-ProteinID:
XP_053185257
LinkDB
All DBs
Position
11:23642631..23657994
Genome browser
AA seq
737 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDASKNGNAYSAGRQCGY
SVAPVNLYSSGWDGGRSNGFVNGYHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFNQ
PLQNAGFNNYDNKEGGWGGPPRDAGFNSFGGRSDRSKSTFFNERGSGSRGRYERGGFSGG
GNSRWTEESREEDWSKPTAPNERLEHELFSASNTGINFEKYDDIPVEATGSNCPPHIESF
HDVDMGEIVMGNITLSRYTRPTPVQKHAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQI
YSDGPGDAMQAMKNNGQDNGRYGRRKQYPLSLVLAPTRELALQIYDEARKFAYRSRVRPC
VVYGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFE
PQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQK
VVWVEEGDKRSFLLDLLNATVIPSEVQENVTEAPEKPGKDSLTLVFVETKKGADALEDFL
YHEGYACTSIHGDRSQRDREEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSD
IEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHK
SSNRGRSKRFSGGFGARDYRQTPGGAGNFSSSRGGRSTGGHGGNRGFGGGGFGGNFYGND
GYGGNYSHSGSVDWWGN
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttgaattctgctgacggacaaggcggaggaactggcagacgttacattccacctcacttg
aggaacaaagatgcttccaaaaatggaaatgcttattccgctggtagacagtgcggttat
tcagtggcaccagtaaatctctactcatctggatgggatggtggacgcagcaatggattt
gtgaatggttaccatgacaaccgcaccaacgggggcttcggagggcgtggaccccctcgc
aatgatagaggtgggcgaggcgcctaccgtggtaacaggggtggaggctcgtttaatcaa
ccattacaaaatgcagggtttaataattatgacaacaaagagggcggctggggaggacct
ccaagggatgctggcttcaacagctttgggggacgctccgatagatccaagtctaccttc
tttaatgaacgtgggtcaggctcaaggggaaggtatgagcgtggcggcttttctggaggc
ggaaacagccgctggacggaggagtccagagaggaagactggtccaagcctacagctccc
aatgagcgcctggaacatgagctgttctctgcgagcaacactggcataaactttgagaaa
tatgatgatattcccgtggaggccactggaagcaactgcccgccccacattgaaagtttc
cacgatgtggacatgggagagattgtcatgggtaacatcaccctgagtcgctacactcgt
cccactccagtccagaaacatgctatccccatcatcaagaccaagagagacctgatggcc
tgtgcccagactggctctgggaagactgccgccttcttgttgccagtgctgagtcagatc
tacagtgacgggcctggagatgctatgcaggcaatgaagaacaatggacaggacaatgga
agatatggacgtcgtaagcagtacccactctcccttgtcctggctcccaccagagagctg
gctctgcagatctatgatgaggcgaggaagtttgcgtaccgctcacgtgtgcgtccctgc
gtggtgtatggcggtgctgatataggtcagcagatcagagaattggagcggggctgtcac
ctgctggttgccacacctggtcgcctggtggacatgatggagaggggcaagattggtctg
gactactgcaactacttggtcctggacgaggctgaccgcatgttggacatgggttttgag
ccacagatcagacgcattgtggagcaagatacaatgccaccaaaaggcatccgtcagacc
atgatgttcagcgccaccttccccaaagagatccagatccttgctcgggacttcctggag
gactatattttcctggctgttggtcgtgtaggttccacctcagaaaacattacccagaag
gtggtttgggtagaggagggtgacaagaggtccttcctccttgacctgctcaatgccaca
gttattcccagtgaggttcaggaaaatgtgacagaggccccagagaagcctggcaaggat
tcgttgactctggtgtttgtggaaaccaagaaaggagccgacgctctggaagacttcctt
taccacgagggttacgcctgcaccagcatccatggagatagatcccagagagacagagag
gaagctctgcatcagttccgctctgggcgctcccccatcttggtggctacagctgtggct
gctcgaggtctggacatcagcaatgtgaagcacgttattaactttgatttgcccagtgac
attgaagaatacgttcaccgtattggccgtacgggacgtgtgggcaaccttggtctggcc
acgtcgttctttaacgacaaaaacagcaacataaccaaagatttgctggacattctggtg
gaggccaagcaggaggttccctcctggcttgagagcctggcctacgagcaccagcacaag
agcagtaaccgtggacgctctaagaggttctctggtggttttggagctagagattaccgt
cagacacctggaggcgctggaaacttcagcagcagccgtggaggacgcagcactggaggc
catggaggaaaccgtggctttggtggaggtggctttggtggcaacttctacggtaatgat
ggctacggaggaaattacagccactctggtagtgtggattggtggggcaactag
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