Scomber japonicus (chub mackerel): 128368485
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Entry
128368485 CDS
T09718
Name
(RefSeq) vimentin A2-like
KO
K07606
vimentin
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128368485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368485
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sjo04812
]
128368485
04147 Exosome [BR:
sjo04147
]
128368485
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
128368485
Cytoskeleton proteins [BR:
sjo04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
128368485
Exosome [BR:
sjo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128368485
Exosomal proteins of other cancer cells
128368485
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Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
TolA_bind_tri
DUF7491
DUF1664
DUF948
DUF7801
Motif
Other DBs
NCBI-GeneID:
128368485
NCBI-ProteinID:
XP_053185279
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All DBs
Position
12:22686243..22691841
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AA seq
455 aa
AA seq
DB search
MSYRSAPHSSYKKMFGGERNAVRSSYSSRQYSIPVRSSRVSFGLSSAPTIYASKTQRLRS
SSAMPRLASENLDFSLSDAINSEFITNRTNEKAQMQSLNDRFASYIDKVRFLEQQNKILL
AELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDE
LSQREEAEANMQSFRQDVDNAALARLDLERKVESLQDEINFLKKLHDEEMLELQSQVQQQ
QHVQVDMEMAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAARNNDALRV
AKQEANDYRRQVQALTCEVDALKGTNESLERQMREIEENFSLETGGYQDTVGRLEEDIHN
MKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMIDSK
PHFETTTTKKVLIKTIETRDGQVINESTQNHDDME
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaggtcagctccacattcttcatataaaaagatgtttggaggggagagaaac
gcggttaggagcagctactccagccgccaatactccatcccggtgcgctcatcccgggta
tcgttcgggctctcctccgccccgaccatctacgcatcgaagacccagaggctccggagc
agctcggccatgccccggctggcctccgagaacttggacttctccttgtccgacgccata
aacagtgagttcataacgaaccgcaccaacgagaaagcgcagatgcagtctctcaatgat
cgcttcgccagctacatagataaagtccgcttcctggagcagcagaacaagatcttgctg
gcagagctggagcagctgcggggcaaaggcacgtcccgcgtcggagatctgtacgaggac
gagatgcgggagctgaggcgccaggtggaccagctcaccaacgagaaggcccgggtagaa
gttcaccgggacaacctggcagacgacatcgacaggctgagagagaagttgcaggatgag
ctatcccagcgagaggaggctgaggcaaacatgcagagcttcagacaggatgtggacaat
gctgccctcgccagactggacctggagcggaaggtggagtccctgcaggatgaaataaac
ttcctcaagaagctgcatgatgaggaaatgttggaacttcagagccaggtccagcagcag
cagcacgtacaggtggacatggaaatggctaaacctgatctgacagcggctttaagggat
gtgcgtctgcagtatgagaacctggcctccaaaaatatccaggagtctgaggaatggtac
aaatccaagtttgctgacctcaccgaagctgcagcccggaataatgatgctttgagggtg
gctaagcaggaggctaatgactatagacgccaagttcaggcactgacctgtgaggtggat
gctctcaaaggaactaatgagtccttggagcgccagatgagagagatagaggagaacttc
tccctggagacgggcggttaccaggacaccgtcggccgtctggaagaggacattcacaac
atgaaggatgagatggcccgtcacctccgggagtaccaagacctcctaaatgtcaagatg
gccctagacattgagattgccacctacaggaagctgctggaaggagaggagagcagaatc
tccaccccactgccaaacttctcatctctaaacctgagagaaacgatgattgactccaaa
cctcactttgaaaccacaacaaccaagaaggtcctcatcaagaccattgagactagggat
ggtcaggtgatcaacgagtcaacccagaaccacgacgacatggagtga
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